| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyc_0235 |
|---|
| Symbol | |
|---|
| ID | 3515078 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychrobacter arcticus 273-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007204 |
|---|
| Strand | + |
|---|
| Start bp | 280100 |
|---|
| End bp | 281011 |
|---|
| Gene Length | 912 bp |
|---|
| Protein Length | 303 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 637668923 |
|---|
| Product | pilus assembly protein PilW |
|---|
| Protein accession | YP_263540 |
|---|
| Protein GI | 71064813 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4966] Tfp pilus assembly protein PilW |
|---|
| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 42 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCCTT ATAATAAAGT AAGTGCAATG GCAGGCTTTA CCCTCATTGA GCTGATGATT
TCACTAGTCT TGGGTTTGCT AATATCTGCC GCAGTCATGC AAGTTTACTT TATTAACACT
CGAACCTTGA CAGTACAGCA GAGTGCCTCA GAAGTACAAG ACAGTACCAT ATTTGCGCTA
CAGTCTTTGA ATGATCATAT TAGGATTGCC AACTTGGGTA ATCCTATTAG CAATATTACA
GATACCACAG ATCATGGCGG AGTCGTGTTG ACTCCAACGA ATCTGGGAAC TACCAATGGA
ACAGCTACCA CATTGCTTAC TAATAGTATG GGTTCTACAG GATGGACTGG CATATCCAAT
ATAACAAATG TAGCAAGCGA CCAGCTCACC ATACAATATA AGAATATTAC CCCTAACATC
CTGTACGACT GTGAAGGAAC AGTAATTCCA GTAAATGATA CTAATTGGGT CATTGAGCGC
TATTTCGTAC GTGCTATATC TACGACAGTA CCAGACTTGG CATTAGCTTG TGATGCTGGT
CGTGCTACTG ACGCTGGTGC GGTCACTAAC TTTGGTGACA ACGGTGAGGT TATTATCCAA
GCCGTTGATC AGTTTCAGGT ATTGTTAGGC GCTCAGGCTG ATGTCAATAA TCTCACGTAT
CTCCCCGCTA AAACTTATTT AGAGCTCACC GACAAACCAG CGATAACGAC TGTTAAGGTT
GGTGTTATTG TTCGTAGTAC GACACCACTC ATAGCAGAGG CTGACAAAGA GACGTTTACT
GTACTTGGTA CTACCCAGAC ATTAAAAACA GACAGCAGCC GTAAAAAGTT CTACCGCCGC
GCCTATGAAT CAACTGTGCT ACTACGGAAT GCCCGTGTCA TGTCAGTGAT TGCCGTTGCA
ACAGCACCAT AA
|
|---|
| Protein sequence | MNPYNKVSAM AGFTLIELMI SLVLGLLISA AVMQVYFINT RTLTVQQSAS EVQDSTIFAL
QSLNDHIRIA NLGNPISNIT DTTDHGGVVL TPTNLGTTNG TATTLLTNSM GSTGWTGISN
ITNVASDQLT IQYKNITPNI LYDCEGTVIP VNDTNWVIER YFVRAISTTV PDLALACDAG
RATDAGAVTN FGDNGEVIIQ AVDQFQVLLG AQADVNNLTY LPAKTYLELT DKPAITTVKV
GVIVRSTTPL IAEADKETFT VLGTTQTLKT DSSRKKFYRR AYESTVLLRN ARVMSVIAVA
TAP
|
|---|
| |