| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_5040 |
|---|
| Symbol | |
|---|
| ID | 3370598 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | - |
|---|
| Start bp | 5980305 |
|---|
| End bp | 5982566 |
|---|
| Gene Length | 2262 bp |
|---|
| Protein Length | 753 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637655415 |
|---|
| Product | binding-protein dependent transport system inner membrane protein |
|---|
| Protein accession | YP_238105 |
|---|
| Protein GI | 66048264 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4590] ABC-type uncharacterized transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.921779 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACCAGA TTTCGCCTCC AGAGCGTATT GATTTCAATA CGCCCGCGAT GGTGCGAAAG
CGTCGTGTCC GTGCGTTGAA GGATCGTCTC ACTCATTGGT ACGTCGCCAT TGGTGGCCTT
GCCGTGCTGG CGGCCATCAC GCTGATCTTC TTCTACCTTG CCTATGTCGT TGCGCCGCTT
TTCAAAGGCG CCAGCCTGAC CGCCGAGCCT GCGCTGCATG CCGCCTGGCT GCAGGACGCT
GGTGCGCCGC TGATGATCAC CATCGAAGAG CAGAACCAGA TCGGCATGCG CATTTCCGAC
AAGGGCGAAG TGGTCTTTTT CAACCTCGAG GACGGCGCAG AGCTGCAGCG CATTGCCTTG
CCGCTTCCCG CGGGCGTGTC CGTCGCGTCC ATCGGCAAGG ACCAGCCCGG CGCGCCATTG
ATAGCCCTGG GTTTGTCCAA CGGCCAGGTG CTGGTGTTCA GGCACTCGTA CCTGACGACC
TACCCGAACG ATCAGAAAAC CATCACCCCG AGCGTGGCCT GGCCCTACGG CGAAGCGCCC
CTGGTACTGG ATGAGGCCGG GCGTGCGGTC GAGCATGTCA CGGTCAGTTC CGATGGCGAC
AGCCTGAAGC TGGCAGGGTC GACCGGTACT CAGTTGCATG TCGTCTCGCT CGAACAGAAA
GAAAACGTGA TGACCGGCGA GATGACCCGC GAGCAGACGC GCATCGAATT GCCGCAGATG
TCTGCTGTAG TCAAGGCGAT CTACATCGAC CCGCGCCAGC AATGGTTGTA TGTCATCAAC
GGGCGCGCGC AGGCGGATGT GTTCAGCCTG CGCGATCGCA GCCTCAATGG CCGCTATAAA
TTGCTGGAAG ACGGCAACGC CGAGATCACG GCGAGCGCTC AACTGGTCGG CGGCATTTCG
CTGATCATCG GCAACTCCAA GGGCAGCCTG TCCCAGTGGT TCATGGCCCG TGGCACCGAC
GGTGAGCAGC GCCTGATGCG CATCCGCGAT TTCAGCCTGG GCAGCGCACC TATCGCGCAG
ATCAAGGCCG AGCAGCGCCG CAAGGGCTTC ATCGCTCTGG ATACTTCCGG CAAGCTGGGC
GTATTCCACA GCACTGCGCA CCGCACCCTG TTGATCGACC AGGTTGCCGA GGGGCCCGGC
ATTCTGGCGT TGTCGCCACG CGCCAACCGG ATTCTGATTG AAAGCGCTGG CAAGCTGCTG
CCGCTGACGC TGGACAACCC GCACCCGGAA GTCTCCTGGA GTTCGCTGTG GGGCAAGGTC
TGGTACGAGA ATTACGATGA ACCCAAGTAC ATCTGGCAGT CCACGGCGTC CAACTCCGAC
TTCGAACCCA AGCTGAGCCT GGCACCGTTG ACCTACGGCA CGCTGAAAGC GGCGTTCTAC
GCCATGTTGC TGGCCGCGCC GCTGGCCGTG GCTGCGGCGA TCTATACCGC CTACTTCATG
GCCCCGGGCA TGCGCCGCAA GGTCAAGCCG GTGATCGAAT TGATGGAAGC GATGCCGACG
GTGATTCTCG GCTTTTTTGC CGGATTGTTT CTGGCCCCGT ATCTGGAAGG GCATCTGCCC
GGCATTTTCA GTGTGCTGCT GCTCACGCCG ATCGGCATTT TGCTGGCGGG CTTTTTCTGG
ACCCGCGTGC CTGATTCGCT TCGCCTGCGT ATTCCCGATG GCTGGGAAAG CGCGATCCTG
ATTCCTGTCG TGCTGTTGGT GGGCTGGTTC TCGTTGAGCA TGAGCCCGCA CCTGGAGAGC
TGGTTCTTCG CCGGGGACAT GAGCACCTGG ATTCGCGACC ACCTGGGTAT CACCTACGAT
CAGCGCAATG CGCTGGTGGT CGGTATCGCC ATGGGGTTCG CAGTGATCCC CAACATTTAT
TCGATTGCCG AAGATGCGGT GTTCAGCGTG CCGCGCAGCC TGACGCTGGG TTCGCTGGCA
CTGGGCGCAA CGCCATGGCA GACCCTGACG CGGGTGGTGA TCCTGACCGC CAGCCCCGGC
ATCTTTTCCG CCTTGATGAT CGGCATGGGC CGGGCCGTGG GGGAAACCAT GATTGTGCTG
ATGGCGACCG GCAATACGCC GATCATGGAC ATGAACCTGT TTGAAGGCAT GCGTACGCTG
GCGGCGAATG TCGCGGTGGA GATGCCGGAG TCGGAAGTGG GCGGCAGCCA TTATCGGGTG
CTGTTTCTGG CGGCGTTGGT GCTGTTGATG TTCACCTTCG TGATGAACAC CCTCGCAGAG
CTGATTCGTC AGCGTCTGCG CAAGCAATAC TCGTCGCTGT AA
|
|---|
| Protein sequence | MDQISPPERI DFNTPAMVRK RRVRALKDRL THWYVAIGGL AVLAAITLIF FYLAYVVAPL
FKGASLTAEP ALHAAWLQDA GAPLMITIEE QNQIGMRISD KGEVVFFNLE DGAELQRIAL
PLPAGVSVAS IGKDQPGAPL IALGLSNGQV LVFRHSYLTT YPNDQKTITP SVAWPYGEAP
LVLDEAGRAV EHVTVSSDGD SLKLAGSTGT QLHVVSLEQK ENVMTGEMTR EQTRIELPQM
SAVVKAIYID PRQQWLYVIN GRAQADVFSL RDRSLNGRYK LLEDGNAEIT ASAQLVGGIS
LIIGNSKGSL SQWFMARGTD GEQRLMRIRD FSLGSAPIAQ IKAEQRRKGF IALDTSGKLG
VFHSTAHRTL LIDQVAEGPG ILALSPRANR ILIESAGKLL PLTLDNPHPE VSWSSLWGKV
WYENYDEPKY IWQSTASNSD FEPKLSLAPL TYGTLKAAFY AMLLAAPLAV AAAIYTAYFM
APGMRRKVKP VIELMEAMPT VILGFFAGLF LAPYLEGHLP GIFSVLLLTP IGILLAGFFW
TRVPDSLRLR IPDGWESAIL IPVVLLVGWF SLSMSPHLES WFFAGDMSTW IRDHLGITYD
QRNALVVGIA MGFAVIPNIY SIAEDAVFSV PRSLTLGSLA LGATPWQTLT RVVILTASPG
IFSALMIGMG RAVGETMIVL MATGNTPIMD MNLFEGMRTL AANVAVEMPE SEVGGSHYRV
LFLAALVLLM FTFVMNTLAE LIRQRLRKQY SSL
|
|---|
| |