| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_4974 |
|---|
| Symbol | |
|---|
| ID | 3370526 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | + |
|---|
| Start bp | 5898317 |
|---|
| End bp | 5901193 |
|---|
| Gene Length | 2877 bp |
|---|
| Protein Length | 958 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637655343 |
|---|
| Product | Rhs element Vgr protein |
|---|
| Protein accession | YP_238039 |
|---|
| Protein GI | 66048198 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATTCGA TACTCGACGC TGCCATGAAC GCCTTCAGCG GACCGCTCAG TCAGGCCGGT
CGCCTGCTGG AATTGAACAC GCCGCAAGGT CAGGAGCTGT TTGCTCTGCG CGCGCATGCC
GTGGAACGTC TGAGCCACGT GGCGCGCTAC ACGGTCGACG TGATCAATCA GACCACCGAC
TTCGACCCGG AGAAGCTGAT TGGTCAGGCA GTGCAACTGA GCATTCGCCT CGACGACGGC
AGCCTGAGCC CTCGGCATGG CTGGGTCGAG AGTGTGCGTT ATCTCGGCAG CGATGGCGGG
CTCGAGGATT GGCAGCTGGT CTTTGCGCCG TGGTTCAGCC TGCTGGAATA CCGTATTGAT
TGCCGAATCT GGCAAGAAAT GAGCTTGCCG GACATCCTTG CTCAGGTGTT TCAGCACTAC
AGCCAGGCCC GCGCCAACTA CCGCTTCGAC CTGCAACGCG ACTACCCGCT GCTGTCATAC
GTGACGCAGT TCAACGAGAC CGACGCCAAC TTCGTGCAGC GCTGGTGCGA GCAGGAAGGC
CTTTTCTGGT ACGTGGAGCA CAAGGTCGAC AGTCATTGCA TCGTGTTTAC CGACAACATT
GACTCTCTGC CCACACTGAA CCCCGCAAGC CTGCGTTTCC ATACCCAGCA GGCCGCCGAC
CTGAAAGACA GCATCACCCA ATGGAGCCCC GGCGCCCGCC TGCTCAATGG CCTGGTGCAG
TGGCGCAGCA GCGAATACCG CAGCCATGCG CAGCCACAGA TCACTCACTC CATGGCACTG
CCTGCCGCAT CCGCGCCTCC TGACCTCGAG CGTTACCAAT ACCGTGGCCA GTATGCATGG
CAGAACCTCG GCCGCGGCGA ATGGCTCGCG CGCGTGCAGA TCGAACAGGA TGAGTCGGCG
GCCCGTCGCA TTCAGGGTCA GGGCGGGGCT CGTCAGATGC AGCCCGGTCA TGGCTTTGAG
CTGACCCAAC ATCCGCTTTA CGAGCTCAAG CCGCTCCAGG ACCGTCAGTT CCTGATCGTC
GCCGTGGAGT TCTTTGTGCA GAGCAACCTG CCAATCGGCA AGACGCGATC AAGCCCACCC
GGGAGCCTGA AAACACAGTT GGATGCACTG CAGACGCAAG CTTCGCTACC GGCGGGCGAT
GAAGGCTTCT ACCTGAATCG CTTTGAAACA CAGCGTCTGG ATATTCCCTA TCGCAGCGCG
TTTACCCATC AAAAACCGGC GCACCCCGGC CCGCAGACAG CAGTCGTCGT GACACCCGGC
GGGCATGAGG TTTTCACCGA TAACCTGAAC CGGGTTTGCG TTCGCTTTCA CTGGGATCGT
CTGGTGAAGG ATGGAGAGCT TGGTTCGTGC TGGCTGCGCA TGATGCAGTC GAGCAGCGGT
CAGGACTGGG GCAGCGTCAA TGTGCCGCGC GCTGGCGAAG AGGTAGTCGT CACCTTTCTT
GATAACGATA TCGACCGTCC GCTGATCATG GGACAGGTCT ACGGCGGACA TAAGCCTGCG
TGGCATTCCA GCGGCCTGAT GAGTGGCTAT AAAAGTCAGG AGATTCAGGG GAGCGGCTAT
AACCAGTGGG TGATGGACGA TTCCACCGGC CAGGTCAGAA CCCAGATCCA CAGTAGCCAT
GGGCATAGTC AGCTGAACCT CGGTTACCTG ATCGACCAAC AGGGCAATTC ACGAGGCGCA
CTGCGCGGTG CCGGTTTCGA GCTGCGGACT GACGCCTACG GTGCCTTGCG TGCTCAGCAA
GGTCTGTACT TGAGCACTTG GCCGCGCAAC AAGGCGCAGG GCGGGCAGAT TGATACCCAG
GAAGCTCAAC AGCATCTGAG CAACGCTCAG GCACGAGTGA AGGCATTGTC GGAAATTGCC
GAGCAGCACA ATGCGCTGCC CATGCCGGGC GGTATTGAAA GTCTCGACCA GCTCAACGCC
GATACCCAGG CCAATTACGG CAGCGGCGGC GAAAGCCCGG TCAGCAGCAG TCCGCAGCAA
CGTAACGGCG GTGATACCAA GGCGGCGATC ATGAGCGGCG GTCGTGGGCA GACGTCAGGC
TATAAAAAGC CCTTGCTGGT CGCATCCTCG CCCGCCGACA TCGCGACCGT CACCCCGCAA
AATACTCACA TCCACAGCGG TAAACAGTTA ACGCTTTCAA CCGGTGAAGA CACCAATCTG
GCCAGCGGCA AGTCACTATT GGTGAGTGTC GCGCAAAGCA TCAGTCTGTT CGCCCAGGCG
GCAGGCGCCA AACTGTTTGC AGCAAAGGGC AAAGTTGAAA TACAGGCGCA AAACGACAGC
ATTGAACTGA CCGCGAAGGA AAGCGTGCGC ATCACCTCTA CGGCTCGCAC TATCGAGATC
GCAGCGCAGG AAGAAATCCT GCTGACCAGC GGCGCAGCGT ACATCCGCAT CAAGGGTGGC
AATATCGAGA TTCATGCTCC CGGAACCATC GACGTAAAAG GCGTGAAAAA GACTTTCGAC
GGCCCTGCGC AGCTCAATCG GGATAATCCG GCGTGGCCGA CCGACTCGAT CAAACAAAAG
CTTACAGCCT ACGCCGGGCT TAGCAGTGCG GCGGGCTATC AGGCATGGGC AGGTCAGCCG
TATACCATCT TTGCAGACGG GGCCGAGGTC AAAAAAGGAG TGATGGACGC CAGCGGACAG
ATCGCCATCG ACCATCACGC TACAACCAGC CAGTACCGTA TTGATCTGAG TAACGGCGTC
AGCTACGACC TGCCAGTAGC GGCCGATTAC AAAGGTGATC CCAAAAATGC GGAACTGGCC
AACCGCGGGC TTCACCGCCA CGAAAGCGCT TCGCACCCAG ACGTCAAACC GAGCGACAAT
CGCAGTCTGT TCCGTAACAG GTATGACCAG TTGAGCAATC CAGAGTCGGA GGCGTGA
|
|---|
| Protein sequence | MNSILDAAMN AFSGPLSQAG RLLELNTPQG QELFALRAHA VERLSHVARY TVDVINQTTD
FDPEKLIGQA VQLSIRLDDG SLSPRHGWVE SVRYLGSDGG LEDWQLVFAP WFSLLEYRID
CRIWQEMSLP DILAQVFQHY SQARANYRFD LQRDYPLLSY VTQFNETDAN FVQRWCEQEG
LFWYVEHKVD SHCIVFTDNI DSLPTLNPAS LRFHTQQAAD LKDSITQWSP GARLLNGLVQ
WRSSEYRSHA QPQITHSMAL PAASAPPDLE RYQYRGQYAW QNLGRGEWLA RVQIEQDESA
ARRIQGQGGA RQMQPGHGFE LTQHPLYELK PLQDRQFLIV AVEFFVQSNL PIGKTRSSPP
GSLKTQLDAL QTQASLPAGD EGFYLNRFET QRLDIPYRSA FTHQKPAHPG PQTAVVVTPG
GHEVFTDNLN RVCVRFHWDR LVKDGELGSC WLRMMQSSSG QDWGSVNVPR AGEEVVVTFL
DNDIDRPLIM GQVYGGHKPA WHSSGLMSGY KSQEIQGSGY NQWVMDDSTG QVRTQIHSSH
GHSQLNLGYL IDQQGNSRGA LRGAGFELRT DAYGALRAQQ GLYLSTWPRN KAQGGQIDTQ
EAQQHLSNAQ ARVKALSEIA EQHNALPMPG GIESLDQLNA DTQANYGSGG ESPVSSSPQQ
RNGGDTKAAI MSGGRGQTSG YKKPLLVASS PADIATVTPQ NTHIHSGKQL TLSTGEDTNL
ASGKSLLVSV AQSISLFAQA AGAKLFAAKG KVEIQAQNDS IELTAKESVR ITSTARTIEI
AAQEEILLTS GAAYIRIKGG NIEIHAPGTI DVKGVKKTFD GPAQLNRDNP AWPTDSIKQK
LTAYAGLSSA AGYQAWAGQP YTIFADGAEV KKGVMDASGQ IAIDHHATTS QYRIDLSNGV
SYDLPVAADY KGDPKNAELA NRGLHRHESA SHPDVKPSDN RSLFRNRYDQ LSNPESEA
|
|---|
| |