Gene Psyr_4373 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsyr_4373 
Symbol 
ID3369913 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. syringae B728a 
KingdomBacteria 
Replicon accessionNC_007005 
Strand
Start bp5227798 
End bp5230521 
Gene Length2724 bp 
Protein Length907 aa 
Translation table11 
GC content62% 
IMG OID637654733 
ProductPAS 
Protein accessionYP_237441 
Protein GI66047600 
COG category[T] Signal transduction mechanisms 
COG ID[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.323082 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.21328 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCCGCAGC CCTTGCCGGT ATCGAGCGAG CCCGGTCCGA TCGGGGCGGA CCTCTATCTG 
CTGCTGGATG ACGAAGGCCG CATACAAAGC ATCAGCCCGC ACTTGCTCTC TCGTCTGGAC
ATCGCTGCGC CAGTGCCGGC TGCCCAGCGA CTGATGAGCC TGCTGCTGCC CAACAGCGCG
CTGGTTATCG AAGGTGTGCC GCGTGACTGG CTGGGGCACA TGCTCGACCT GGACTTCAAG
GGCGACGATG CACACACCTT GCACGCCCGA GGCTGGGTGC AGGCGCATGG CAAGGGCTGG
CTCTTGCAAT TGCTGGATAT CAGCGACCTG ATGGAGGAAG CCAGTGCCGC GCGCAGCCGC
CAGCAGTGCC TGCGGTTTGC CGGGCAGATG GCCGAGCGTG TGCGAGGGTG CAATGTCGAC
CGCCTGACTG CCGTGGTGAG CGAGCAGCTT GAGGAACTCG CGCAGCTGTG GCGCATTCCC
TGTGTGGCGC TGGTGTTGCC GGAAGTTGGC GGTGTCGGCT GGCGTGTTTA TTGTCAGTAC
AGCGCTCATA CGGCGCCCGA GTTGTGGCAG GTCGGGCAGC GGCTGGGCAC TGCGCTGGAT
CGATTCAACG TCGATGCCAC GCAGCAGCTG AGGTTTGGCG GCAGTGTCGA TGCGGGGGCG
CTGCAAAGTA TTTTCGGCAA CGCTGACGGT TTTCTCATCC CTCACAGCCG CGATAACGTT
GCCAAGGCCT GGCTGATGTT CGGATTTTAT AACGCGCAGC AGCAGGCGCC GGACCTTGGC
GAGCGCGAGT GGCTTAACCT CGGCTCAGCC TTGGCCGGGC CGGTGCTTTT TCGAATGTCC
GAGCAACATA ACCGTCACCA TGTCGAGCGC CTGGCGGTGC TTCAGGACCT GCTGGGCACC
GGGTGGTGGG AATTGCTGCC GGATCGTGAC GAGGTTCTGC TGGCACCGCA GCTGGCTCGC
AGTCTGCGTC TGGGCGACCG GGTCGAGAGC CTGTCGCGTC AGGACTGGCT GGCACTGATT
CATCCCGCCG ATCGACAGGA GCTGTCCAGT CGCCTCGCCC AGTTGCGCGA CAAGGGCACG
CCGCTGTTGC TCTGTGTACG TCTGGCACAA ACCGACCCCG CTCAGGAAAC CCTCTGGTTT
CGTATTCAGG GGCAGGCGTT GCACAGGGGG CAGGTGCAGC GGGTATTGGG CTTCATGCTG
GACGTCAGCG ATATCAAGAA TCAGGAAACC GAGGCCGCCG CCGCCCATGC CCGGCTGGAT
AACCTGATTG CCAGTTCGCC CGCCGTGATT TACGTGCAGC GTTATGATCA CGGCAATCTG
GAACCCACCT TTTTCAGTGA CAGCCTCACG CCTTTGCTGG GCTGGACGCT GGCCGATTGC
GTCGACGGGC AACTGGCGGG GTACATCCAT CCCGACGACC ACGACATCTG GTTCGAGCGT
AATCGCCAAC TGCTGCGCGA AGGATTCGTC AGCCGCCGTT TCAGGTTGCG CAACAGGAAC
GGCCAATACC ACTGGCTGCT GGACGAGGCG CGACTGCTGC GTGACGACCT CGGCATGCCG
GTGGAGGCGG TGGGTCTGTG GCTGGATGTG ACCGAGGCCA CCCTGGCCGC CGAGCATATA
CGGCGTAGCG AGGAGCGTTA CCGCATTCTG GTCGAGGATT CGCCGGCCAT GATCTGCCGC
TACACGCCGG ACCTGGTGTT GAGTTTCGGC AACCGGCCGC TGGCCAAGTA TATGGAGTGC
ACACCCGAGC AACTGACCGG GATCAACCTG GGAGACTGGC TGTCGGACGA GCAGCGCGAG
GCATTCATCA AGCGTATCGG CCAGCTGACT CCGGAAGCGC CGGTGAGTAC CGAAGAAATC
TGTATCGAGC TGCCGGGACG CGAGTATGCC TGGTGGATAT GGGCCGACCG GGGGGTATTC
GATGAACACG GCAAACTGGT CGAAGTGCAG GCGGTGGGCC GTGACAACAC CGATGTACGC
CGCTCGCGCA TGCAGTTGAA TCAGAGCGCG AAGATGGCAA CGCTTGGCGA GATGTCCACC
GGTCTGGCCC ACGAGATCAA TCAGCCGCTC AACGTCATGC GCATGGCCGT GGTCAACGTC
CTCAAGCGTC TGGGTCGGGG TGATGTGGAC ATCGAATACC TCACTGAAAA GCTCAATCGC
ATCGACACCC AGGTGCAGCG CGCCGCCCGG GTGGTCGATC ATATGCGGGT ATTCGGTCGC
CGCTCTGAAG TAGAAGAGCA GCTGTTCGAT CCGGCCCAGG CGGTCGAAGG CACGATCTCG
ATGCTGGCTG AAGGCATGAA AGGCAAGGGC GTGCAGCTGC GGGTCGGCGG GATGATCGAC
GCGGTGCGGG TTCGTGGTCA TGTCGATCAG CTTGAGCAGG TGCTGATCAA CCTGATGGTC
AACGCCCGGG ATGCCTTGTT GTCGCGCCGG GAAAAGGACC GGGATTTCGA GCCATGGATC
AGTGTCGAGG CCGAGCGCGA TGAAAATATC ATCCGCCTGG CGGTCCAGGA CAACGGTGGA
GGCATTGATC CGCGGTTGCT GGAGCGCATT TTCGAGCCGT TTTTCACCAC TAAACCGGTA
GGTGTCGGCA CCGGGCTGGG CTTGTCCGTC AGTTACGGCA TCGTCGACCA GATGGGCGGC
CAGCTCAGCG TCGCCAACAT CGGCGAGGGC GCTCGCTTCC AGATCGAGCT GCCGATATTC
AACGCCGATC AGCCCGGCAG CTAA
 
Protein sequence
MPQPLPVSSE PGPIGADLYL LLDDEGRIQS ISPHLLSRLD IAAPVPAAQR LMSLLLPNSA 
LVIEGVPRDW LGHMLDLDFK GDDAHTLHAR GWVQAHGKGW LLQLLDISDL MEEASAARSR
QQCLRFAGQM AERVRGCNVD RLTAVVSEQL EELAQLWRIP CVALVLPEVG GVGWRVYCQY
SAHTAPELWQ VGQRLGTALD RFNVDATQQL RFGGSVDAGA LQSIFGNADG FLIPHSRDNV
AKAWLMFGFY NAQQQAPDLG EREWLNLGSA LAGPVLFRMS EQHNRHHVER LAVLQDLLGT
GWWELLPDRD EVLLAPQLAR SLRLGDRVES LSRQDWLALI HPADRQELSS RLAQLRDKGT
PLLLCVRLAQ TDPAQETLWF RIQGQALHRG QVQRVLGFML DVSDIKNQET EAAAAHARLD
NLIASSPAVI YVQRYDHGNL EPTFFSDSLT PLLGWTLADC VDGQLAGYIH PDDHDIWFER
NRQLLREGFV SRRFRLRNRN GQYHWLLDEA RLLRDDLGMP VEAVGLWLDV TEATLAAEHI
RRSEERYRIL VEDSPAMICR YTPDLVLSFG NRPLAKYMEC TPEQLTGINL GDWLSDEQRE
AFIKRIGQLT PEAPVSTEEI CIELPGREYA WWIWADRGVF DEHGKLVEVQ AVGRDNTDVR
RSRMQLNQSA KMATLGEMST GLAHEINQPL NVMRMAVVNV LKRLGRGDVD IEYLTEKLNR
IDTQVQRAAR VVDHMRVFGR RSEVEEQLFD PAQAVEGTIS MLAEGMKGKG VQLRVGGMID
AVRVRGHVDQ LEQVLINLMV NARDALLSRR EKDRDFEPWI SVEAERDENI IRLAVQDNGG
GIDPRLLERI FEPFFTTKPV GVGTGLGLSV SYGIVDQMGG QLSVANIGEG ARFQIELPIF
NADQPGS