| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_4326 |
|---|
| Symbol | |
|---|
| ID | 3369866 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | - |
|---|
| Start bp | 5178780 |
|---|
| End bp | 5179790 |
|---|
| Gene Length | 1011 bp |
|---|
| Protein Length | 336 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 637654686 |
|---|
| Product | type III effector HopI1 |
|---|
| Protein accession | YP_237394 |
|---|
| Protein GI | 66047553 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0484] DnaJ-class molecular chaperone with C-terminal Zn finger domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCAACC TCACCAACCT TGCATCTTCG TTGGCGCGAG TGGCGCTCAG CGATTCGACA
AAGCCAACGA TAGACCGCGC GATGAACGTC GTCAGCCATA TCGCTGGCAA AGTGGCGTTG
CAGGTCAACA GCTCATTGCT GGAGCAGAAA GGCCGGCTCA ACGAGCGCCA GCAGAAAGGC
CTCGAGGTGA TCCTCGACGC ATTGCTCGGC AAGGAACCGG TGACCCATGT CGAGACGCAC
GAAGGGGGAG GCCGATTCAA TCTGGCGCGA GCTGCCTTCG ACGTGGCCAG CGTTGTCTGG
GAGCGCGACC AGTCGATGCG CAACGTGATG AGCTTTTTGG GCATCAATGA TAGCAAGGGC
AACCTGCTGT TCTCTCTGGG CAAGACGCTG GCCGACGCGA TGGCCAGGCC CGAACCCGAG
AATGGCAAGC ACAACAGTGA GGCGAACTAC GCATTCTTCT CCAGCAACTT GAAGCTGAAC
AAACTGATGA ATGACATCGC TGACCAGGTG ATCAACGAGA TTCGTCAGCA GAACACCGAT
CGCGTGCGAC GACCCACACC GGGCCCATCC TGGAGACCTG AAAGTACTCA ACAGCAAGCA
CGCCCACAAA CGCCTCCAAG CGCTCGCCCC CAGGCCAATA GCGCGCCGCC ACCGCCGAAA
GCCCAGCCCG ATGCGGGCGC TCAGCGGCCG TCAACAGAGC GGCCCCCCAA AACAACCCCC
ACTGGCGCGT CCGCGAAGGT GGACGATTCC GCCCCCGCCA AACCACCCGT GAAACAGTTG
TACGAGCACT TGGGCCTCTC GGACATGACG GCGGACCTCT CCGCAGTCAA AAAGGCTTAC
AAGAAGGCCG CGTTGAAGTA CCACCCTGAT AAAAACGCGG GCAACGTGGC CGAGGCGAAT
GAGCGTTTCA AAAAAATTTC AAATGCGTTC AGGATTTTGT CCGATCCAGA ATTGCGTACG
AAATACGACA ATGGCGTTAT TGATGAGAAC GGTAACGAGT TCAAGACCTG A
|
|---|
| Protein sequence | MINLTNLASS LARVALSDST KPTIDRAMNV VSHIAGKVAL QVNSSLLEQK GRLNERQQKG
LEVILDALLG KEPVTHVETH EGGGRFNLAR AAFDVASVVW ERDQSMRNVM SFLGINDSKG
NLLFSLGKTL ADAMARPEPE NGKHNSEANY AFFSSNLKLN KLMNDIADQV INEIRQQNTD
RVRRPTPGPS WRPESTQQQA RPQTPPSARP QANSAPPPPK AQPDAGAQRP STERPPKTTP
TGASAKVDDS APAKPPVKQL YEHLGLSDMT ADLSAVKKAY KKAALKYHPD KNAGNVAEAN
ERFKKISNAF RILSDPELRT KYDNGVIDEN GNEFKT
|
|---|
| |