| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_3780 |
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| Symbol | def |
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| ID | 3369315 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | - |
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| Start bp | 4498007 |
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| End bp | 4498546 |
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| Gene Length | 540 bp |
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| Protein Length | 179 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637654138 |
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| Product | peptide deformylase |
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| Protein accession | YP_236849 |
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| Protein GI | 66047008 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0242] N-formylmethionyl-tRNA deformylase |
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| TIGRFAM ID | [TIGR00079] peptide deformylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.873393 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0533041 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGATCCACA AAATCCTGAA GATGGGCGAT GAGCGCTTGT TGCGCATCGC CCCTCCGGTA
CCCGCAGAGA TGTTCGGCAG CAGCGAGCTC GATACGCTGA TTGCCGACAT GTTCGAAACC
ATGCACAGCG TCGGCGGTGT GGGGCTGGCG GCACCGCAGA TTGGCATCGA TCTGCAACTG
GTGATTTTCG GTTTCGAGCG CAACGAGCGC TATCCCGAGG CCGAGGCGGT CCCGCAGACG
ATCCTGATCA ACCCGCTGAT TACCCCGCTG AGCCCGACGC TGGAAGAGGG CTGGGAAGGC
TGCCTCTCAG TGCCCGGCCT GCGCGGCATG GTGGACCGTT ATCAGAGCAT TCGTTACGAA
GGCTTCGATC CTCAGGGCCA GCCCATCGAG CGTGTTGCCC ACGGTTTTCA CGCGCGGGTC
GTTCAGCATG AATGCGACCA CCTGATCGGT CGGCTTTACC CGTCGCGCAT CACCGATTTC
AGCAAATTCG GCTTCATGGA CGTGATGTTT CCGGACATGG ACCCCAACGC CGACGAGTGA
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| Protein sequence | MIHKILKMGD ERLLRIAPPV PAEMFGSSEL DTLIADMFET MHSVGGVGLA APQIGIDLQL
VIFGFERNER YPEAEAVPQT ILINPLITPL SPTLEEGWEG CLSVPGLRGM VDRYQSIRYE
GFDPQGQPIE RVAHGFHARV VQHECDHLIG RLYPSRITDF SKFGFMDVMF PDMDPNADE
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