| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_3639 |
|---|
| Symbol | |
|---|
| ID | 3369174 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | - |
|---|
| Start bp | 4321250 |
|---|
| End bp | 4322692 |
|---|
| Gene Length | 1443 bp |
|---|
| Protein Length | 480 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637653998 |
|---|
| Product | Beta-lactamase-like:RNA-metabolising metallo-beta-lactamase |
|---|
| Protein accession | YP_236709 |
|---|
| Protein GI | 66046868 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1236] Predicted exonuclease of the beta-lactamase fold involved in RNA processing |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.493951 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCTACC CGCAAATCAT TCATCACGGC GCTGTCGATA CAGTAACGGG CTCGTGTCAT
CAACTGCACA TGAATGCATC GAGCAGCCTG CTGATTGACT GTGGGTCGGT GCAGGAGCGC
GGCAGGCGGT CCGGGACGGC TTCATTCGGA TTCGATCCCG AGGCTATCAG GGCGCTGTTG
ATCAGCCATG TACACAATGA CCATGTCGGG CGTATTCCCG AGTTGCTGGC ATCCGGTTAC
AAGGGGCCGA TACTGTGCAG TGAGCCCAGT GCCCATCTGT TGCCACTGGT CATGGAAGAT
CTCCTGAAAA TTGAATTTGC ACACGACCCC GGGCAAGTCG CGCGCTACCT GGACGTCATC
AACAAGAGAA TCATCGCTTT GCCATTCAAT GAATGGTTCA GTCTGGTCGA CAACGAATCC
CTGCATTGCC GGGTCCGCTT GCAGCGTGCC GGACACATAC TGGGTTCGGC CTATATAGAG
TGTGATCTTC AATACCCTGC ACAAGGGCGT TCTGTGCGGG TGGTATTTTC CGGTGACCTG
GGGGCAAGCC ATACACCGTT TCTGCCTGCG CCGAAGCCGC CCGAGCGCGC GGATGTGCTG
GTCCTGGAAA GCACCTATGG CAATCGTATT CACGAAGATC GCAGCATTCG TCAGCAAGGG
CTGGAGCGCA TCATAGACAA GGCGCTGGAG GATAACGGCA CCGTCCTGAT ACCAGCGTTC
AGCATCGGCC GAACCCAGGA ATTGCTCTAC GAGCTGGAAG ACATACTGCG ACACAAGATG
CCGTTGGATC ATTGCGCCGG GAACAGTGAG CACCTGAATG ATGGTGACGT ACCGTGCGCA
GACTGGTCGA GGTTGCCGAT CATCCTTGAT TCGCCTCTGG CGAGTCGTTT TACCAGGGTC
TATCAGTCGT TCGAAGACTA TTGGGATGAG GATGCCCGGC TGAGGCTCGA CGTCGGCAGA
AAGCCGTTGG GTTTCGAACA ACTGGTTACC GTCGATACTC ATGAGGAGCA CCTGCGCACG
GTCAACTACC TGGCCAGCAC GGCGCGTCCG GCCATCGTGA TTGCCGGTAA CGGTATGTGT
GCCGGAGGCA GAATCGTCAA TTACCTGAAA GCCATGCTCG GCGACACGCG ACATAACGTG
GTATTTGTCG GCTATCAGGG CAAGGGAACA CCGGGCGAGG CCATTCAGTT GCACGGCCCG
TCGGGTGGCT ATGTAGAGCT GGATCGCGAG CGCTTTGATA TAAAAGCGGG GGTCCATACC
GCAAAAGGCT ATTCTGCCCA CGCCGATCAG GTCGAACTGG TCGAGTTCGT CACGGGGATG
AAAGAGTGGC CGACGCAGAT TCGCTTGGTG CATGGCGAGG CGGTGGCGAA AAAGGTGCTG
GGTAATATTC TGAGTCGTAA GTACTCGCTC GAAAAACGCC CGTTGGAACT GCTCATCCCT
TGA
|
|---|
| Protein sequence | MSYPQIIHHG AVDTVTGSCH QLHMNASSSL LIDCGSVQER GRRSGTASFG FDPEAIRALL
ISHVHNDHVG RIPELLASGY KGPILCSEPS AHLLPLVMED LLKIEFAHDP GQVARYLDVI
NKRIIALPFN EWFSLVDNES LHCRVRLQRA GHILGSAYIE CDLQYPAQGR SVRVVFSGDL
GASHTPFLPA PKPPERADVL VLESTYGNRI HEDRSIRQQG LERIIDKALE DNGTVLIPAF
SIGRTQELLY ELEDILRHKM PLDHCAGNSE HLNDGDVPCA DWSRLPIILD SPLASRFTRV
YQSFEDYWDE DARLRLDVGR KPLGFEQLVT VDTHEEHLRT VNYLASTARP AIVIAGNGMC
AGGRIVNYLK AMLGDTRHNV VFVGYQGKGT PGEAIQLHGP SGGYVELDRE RFDIKAGVHT
AKGYSAHADQ VELVEFVTGM KEWPTQIRLV HGEAVAKKVL GNILSRKYSL EKRPLELLIP
|
|---|
| |