| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_3248 |
|---|
| Symbol | |
|---|
| ID | 3368775 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | + |
|---|
| Start bp | 3891187 |
|---|
| End bp | 3892293 |
|---|
| Gene Length | 1107 bp |
|---|
| Protein Length | 368 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637653599 |
|---|
| Product | helix-turn-helix, Fis-type |
|---|
| Protein accession | YP_236318 |
|---|
| Protein GI | 66046477 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.12684 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGGGC AACTGCTGAC CTTACCCCAC TCGCCTGCGC TGGCCACCTC GATCAGGGCC
ACTGCGCAGG TGTTCGAAGA CCCCAAGTCG CGAGCCCTGC TCGCTCACGT ACGCCAGGTT
GCGCCCAGCG ATGCCAGTGT GCTGATCATC GGCGAGACCG GCACCGGCAA GGAACTGGTT
GCTCGCCACG TCCACGAACT GAGCGCCCGC CGCGACAAAC CGTTCGTGGC GGTCAACTGC
GGCGCGTTCT CCGAGAACCT GATCGAGGCG GAGTTGTTCG GCCACGAAAA AGGCGCGTTC
ACCGGAGCGA TCAGCGCCAA GGCCGGCTGG TTTGAAGAGG CCAACGGCGG CACGCTGTTT
CTCGATGAGA TCGGCGACCT GCCCATGACC TTGCAGGTCA AATTGCTGCG CGTGCTTCAG
GAGCGTGAAG TGGTGCGTCT GGGCTCGCGA AAGAGTGTGC CCATTGATGT AAGGGTGCTC
GCAGCCACCA ACGTGCAACT GGAAAAGGCC ATCAACGCCG GGCATTTCCG CGAGGACCTT
TACTACCGGC TCGACGTGGT TAATCTGGAA TTGAGCCCGC TGCGCGAGCG GCCGGGCGAT
ATCCTGCCCC TGGCCCGGCA CTTCATAGAG GTCTACAGCC AGCGGCTGCG GCATGGTCCG
GTGCGGATCA GCCCCGAAGC CGAGCACAAG CTCAAGACCT ACAGCTGGCC AGGCAATATT
CGCGAGCTGG AAAACGTCAT CCATCACACC CTGCTGGTGT GCCGTGAAGG TGTCATTCAG
CGTGATGACC TGCGCATGTC GAACCTTAGA ATCGAGCGCC AGGATGAACA CAACCCGCCT
GACGAATCCG CCGAGCAACT GCTCAACCGG GCGTTTCAGA AACTGTTTGA AGAACAGGCC
GGTGCCTTGC ACGAGAAGGT CGAAGATACG TTGCTCAGAA CCGCCTATCG CTTCTGCCAC
CACAACCAGG TGCACACGGC CAGCCTGCTG GGCCTGACCC GCAACGTCAC GCGCACACGT
CTGATCAAGA TTGGCGAACT GGCGGTCAAC AAACGCAGGC CGGGTGAAAA TGTCCAGGGC
GACCGCATGC TGCACCTGTC GGTGTGA
|
|---|
| Protein sequence | MSGQLLTLPH SPALATSIRA TAQVFEDPKS RALLAHVRQV APSDASVLII GETGTGKELV
ARHVHELSAR RDKPFVAVNC GAFSENLIEA ELFGHEKGAF TGAISAKAGW FEEANGGTLF
LDEIGDLPMT LQVKLLRVLQ EREVVRLGSR KSVPIDVRVL AATNVQLEKA INAGHFREDL
YYRLDVVNLE LSPLRERPGD ILPLARHFIE VYSQRLRHGP VRISPEAEHK LKTYSWPGNI
RELENVIHHT LLVCREGVIQ RDDLRMSNLR IERQDEHNPP DESAEQLLNR AFQKLFEEQA
GALHEKVEDT LLRTAYRFCH HNQVHTASLL GLTRNVTRTR LIKIGELAVN KRRPGENVQG
DRMLHLSV
|
|---|
| |