| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_2978 |
|---|
| Symbol | |
|---|
| ID | 3368498 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | - |
|---|
| Start bp | 3570625 |
|---|
| End bp | 3571899 |
|---|
| Gene Length | 1275 bp |
|---|
| Protein Length | 424 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637653324 |
|---|
| Product | PAS |
|---|
| Protein accession | YP_236050 |
|---|
| Protein GI | 66046209 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.317341 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.6882 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCATTGC ATTCGGCTGA GCAGGATCGC GAAGTCGCGC AGTACATCGA CGCCTTGCGT
GAAAGCGAGC GTCAGTTCAG GACATTGGCT GACAACATGA GCCAATTGGC CTGGACTGCC
AGCCCCCGAG GGCAGGTCCA CTGGTACAAC GAGCGTTGGT ATGCCTACAC CGGTGCCTCG
CTTGAGGCCA TGACGGCCTT GGGCTGGCGC TCGGTTCTGC ATCCTGAGCA TCGCGAGCGG
GTGATGGCGC GTTTGCAATA CTGCTTTTCC ACCGGTTCGA TCTGGGAAGA TACCTTCCCG
ATCCGTGGCA AGGACGGTGC GTTCAACTGG TTCCTGTCGC GCGCGTTACC CCTGCGCGAT
GCGCGGGGCC ACATCACCCA CTGGCTGGGT ACTCACACCG ATATCACCGC TCAGGTCAAT
GCAGAAGAGG CGTTGCGCGA ACTCAACGAG AGTCTTGAGT TACGCGTCGC CGAGCGTACG
CGTGAGCTGG AAACCGCCAA TAAGTTGCTG CAGGCCGAAA TTGCCGAGCG GGCGATGGCT
GAGGAGGCCT TGCGTCATGC GCAGAAGATG GATGCGATCG GTCAGTTGAC CGGGGGCATC
GCCCATGACT TCAACAATGT ACTTTCCGGC GTGATTGGCG CACTGGACAT GATCAGGCTG
CGTGTAGCGG CCGGGCGGAT CGGTGAGGTC GCGCGCTACC TGGATGCGGC AGCGAGCTCG
GCGAACCGTG CTGCCGCGCT GACCCGCAGG CTGCTGACAT TTGCCCGCCG GCAGTCGCTC
AACGTCACTG TAGTGGACGT CAATTGCATG GTCCGCTCCA TGGAGGAGCT GTTGCGAGGC
ACGGTCGGCG CTCATGCGCA TCTGGAGATC GAGCTGGAGG AGGGGTTGAG CGCGGTGCGC
ACCGATGAGC ACCAGCTGGA AAATGCCTTG TTGAATCTGG TCATCAACGC TCGCGATGCT
GTGCCTGTCG GAGGGAGGCT GTGCGTGCGC AGTCGCTCGT TAACACTGGC GGCGCAAAAA
GAGGGTTTGC TGCCTGGCGA CTACATACAG CTCAGTGTTG AAGATAACGG CTGTGGCATT
GCTCAGGACG TTATCGACCA GGTGTTCGAC CCGTTTTTCA CCACCAAACC GGTAGGTCAG
GGAACCGGGC TGGGTTTGTC GATGGTCTAC GGCTTTACCC GGCAGAGTGG CGGGCACGTG
CATATAGAAA GCACTGAAGG TCAGGGCACC CGGGTTCATT TGCAGCTGCC ATGCGGCAAG
GCTGCGGTTG CCTGA
|
|---|
| Protein sequence | MPLHSAEQDR EVAQYIDALR ESERQFRTLA DNMSQLAWTA SPRGQVHWYN ERWYAYTGAS
LEAMTALGWR SVLHPEHRER VMARLQYCFS TGSIWEDTFP IRGKDGAFNW FLSRALPLRD
ARGHITHWLG THTDITAQVN AEEALRELNE SLELRVAERT RELETANKLL QAEIAERAMA
EEALRHAQKM DAIGQLTGGI AHDFNNVLSG VIGALDMIRL RVAAGRIGEV ARYLDAAASS
ANRAAALTRR LLTFARRQSL NVTVVDVNCM VRSMEELLRG TVGAHAHLEI ELEEGLSAVR
TDEHQLENAL LNLVINARDA VPVGGRLCVR SRSLTLAAQK EGLLPGDYIQ LSVEDNGCGI
AQDVIDQVFD PFFTTKPVGQ GTGLGLSMVY GFTRQSGGHV HIESTEGQGT RVHLQLPCGK
AAVA
|
|---|
| |