| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_2281 |
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| Symbol | |
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| ID | 3367796 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | + |
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| Start bp | 2648793 |
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| End bp | 2650460 |
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| Gene Length | 1668 bp |
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| Protein Length | 555 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637652631 |
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| Product | GGDEF |
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| Protein accession | YP_235362 |
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| Protein GI | 66045521 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000303682 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0271008 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCCCTG AGCAATCAGG TCCGGTTTTC AGAAAAACCA GATGCACTGG TTCTCACCTG
TTGTGGAGGC AAGTTTTGAA ACGCGACCTT CGGCTTGCGT CATGGCTGAT CTTCGTAGTG
TGCGCCTGCG TGGTGATGTT GATGGCCTGG CAAGCATGGA CCGCACGCCG CAACACCCTG
GAAAACATCC AGACCAGCAC GATCAATCTG GCTGGAGCGC TGAGCACCTA CACGGATGGT
ATTTTCAAGC AAAGCGAGCT GATGCTGATC GGCCTGACGG AGCGTGTCGA AAAGGACGGC
GTCGGGCCTG AACAGATCGA GCGTCTCAGG TGGGTCATTG CGCGTGAAAT GGGCGCGCTG
CCGCAGATCG ATACCGTGTC GCTGTACAAC GCCGACGGGT ACTGCATCTT CTCGAGCAAT
CCCAAGGTCA TTGGCATCAA CAGCGGGCAG CGCGAGTTCT TTCAGCACCA CCTGCAGATG
CCTGACAAAA CCCCTTATAT CGGCCCGACG ATTCGCAGTC GCGCTTCCGG CGAATGGGTC
ATATCAGTCA GCAGGCGCAT CAATAATCCC GACGCCAGTT TTGCCGGGCT GATGGTCGCG
ACCATCGGTG TCGACCATCT GTTGAAGTTC TACTCGGATA TAAAGGTTGG TCGAACCGGC
ATCATCAGTC TGACGTCGAC CGCCGGGCAA TTGCGGGTGC GTTATCCCCA TCTGGAGCAG
GAGATCGGTC GCGATCTGTC ATCGACGCCC ATTTTCAAGT CGGAACGCGG GCGAGTGTCC
GGTACCGCCC AGTTCGTTTC CAGGATTGAC GGTGTTGCGC GTTTTTATGC GTTCAAACGC
AGTGATGTGT ACCCGATCGT CACCGTGGTT GCGCTGGGTC AGAAAGAAGC CATGCTCGAC
TGGCTGGGTC AGACCAAGCA GTCCATTCTG GTCATGCTGG TGCTGCTCGG ACTGGTGATC
GGACTTGGCG TTCGTCTGAT CGGGCATATT CACAGCCGCA TACGCGCAGA AGACCAGTTG
CTCGATTCCC AGGCGGCCCT GATCCAGCTG AACCAGCACC TGGAGTTGAT CGCCTCCGAA
GACAAACTGA CCGGGCTGGC CAATCGCAGA CGTTTCGATC AGTTTCTGGA AGTCGAATTC
AAGCGCGCCA GACGCGAGCG CAGCCCGCTG TCGTTGATTC TGATCGATGC CGATCATTTC
AAGCGCTATA ACGATCATTA CGGTCACCTG GCCGGTGACG AATGCCTGAT TGCGCTGGCC
AGAGTGGTCG AGCAGTTCAT TCGTCGTCCC AGTGACGTCG CCGCCCGTTA TGGCGGTGAA
GAGATCGCGG TGGTGTTGCC CGGTACTGAT GAGTCGAACG CTCGCCAGGT GGCCGAGAAG
ATCCTGCGGG CGATCCGTGA CGAGCAGATC GAACATCCTG CCAGCCCGTT TGGCATCGTG
ACGATCAGCC TCGGTGTTGC GACATTCGTC GGCACGGATC GCCAACTGGA TCAGCGCGGC
CTGATCGAGC TTGCCGACCG CGCGTTGTAT GCCGCCAAGT CGCAGGGGCG CAACCGGGTG
AATGTGGCGT CGGAAATCGC GACCAGTACG TTACCGGCCT GGACCCGCGT CAAGTCCGCT
ACGGACGCGC AAGCCGACAC GGAGCCAAGG TCGGGCCAGC GGGATTGA
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| Protein sequence | MAPEQSGPVF RKTRCTGSHL LWRQVLKRDL RLASWLIFVV CACVVMLMAW QAWTARRNTL
ENIQTSTINL AGALSTYTDG IFKQSELMLI GLTERVEKDG VGPEQIERLR WVIAREMGAL
PQIDTVSLYN ADGYCIFSSN PKVIGINSGQ REFFQHHLQM PDKTPYIGPT IRSRASGEWV
ISVSRRINNP DASFAGLMVA TIGVDHLLKF YSDIKVGRTG IISLTSTAGQ LRVRYPHLEQ
EIGRDLSSTP IFKSERGRVS GTAQFVSRID GVARFYAFKR SDVYPIVTVV ALGQKEAMLD
WLGQTKQSIL VMLVLLGLVI GLGVRLIGHI HSRIRAEDQL LDSQAALIQL NQHLELIASE
DKLTGLANRR RFDQFLEVEF KRARRERSPL SLILIDADHF KRYNDHYGHL AGDECLIALA
RVVEQFIRRP SDVAARYGGE EIAVVLPGTD ESNARQVAEK ILRAIRDEQI EHPASPFGIV
TISLGVATFV GTDRQLDQRG LIELADRALY AAKSQGRNRV NVASEIATST LPAWTRVKSA
TDAQADTEPR SGQRD
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