| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_1968 |
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| Symbol | |
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| ID | 3367478 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | - |
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| Start bp | 2281105 |
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| End bp | 2282493 |
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| Gene Length | 1389 bp |
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| Protein Length | 462 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637652313 |
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| Product | RND efflux system, outer membrane lipoprotein, NodT |
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| Protein accession | YP_235049 |
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| Protein GI | 66045208 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.840689 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAGCCGA GTCTCTCCGT TTTGACTGCC TGTCTGTTGC TGAGCGCCTG CCAGACACCC
GCCCCGCCGC CGGACAGCGG CATCCAGCCA CCGGCAAGCT GGGCGTTTGC CGAAAACGCC
GCCGCGCAGC GCAGCGACGT GCGTTGGTGG CAGCAGTTCG GCAGCCCGCA GCTGGATCGC
CTGATCGAAC AGGCCAGCCG CGACAGCCAC GAAGTCGCTG CGGCGATGGC GCGGGTTCGT
CAGGCACAGG CCAGCGCCAT CATCGGCGGC GCGCCCTTGC TGCCGGAACT GGCCTTTGAC
CTGCGCGGCG AACGTAACCG GTTCCTGCGC AACAGCGACC GCAAGGCCAA CCCTTCCGAC
GACAACAACA CCAACAATTT CACCAGCGAC CTGACCGCCA GCTATGAAGT GGATTTCTGG
GGCGGCATCG CAGCGGGACG CGACAGCGCA CTGCAAGGCC TGCGCGCCAG CCAGTTCGAT
CAGGCGACCG TGGAGCTGAC CCTGCTGGCC AACGTCGCCG ACCGCTATGC GCAAACCCTG
GCGGCGCGCG AGCAAGGGCG GATTGCCGAG CTGAATCTGG CCAACGCGCA AGACGTGCTG
CGCCTGGTGC AGACCCGCTA TGAATCGGGC TCGGCAACGG CACTGGAGCT GGCACAGCAG
AAGAATCTGG TTGCAACCCA GCAGCGTGAA CTGCCCCGCG TTCAGCAACT GGCCAACGAG
CAGTTGATCA CCCTGGCGGC CTTGCTCGGT CAGCCGGTGC AGAATCTGCA CCTCGCGGAT
CAGCCCTTCG ACACCCTGAA CTGGCCGGAC ATCGGCGCAG GTGTACCGAG CGAGTTGCTG
ACCCGCCGCC CTGATCTGGC CAAGGCCGAG GCTGACCTGG CAGCGGCACA GGCCAATGTC
ACCGTCGCCC GCGCCGCCAT GCTGCCGAAA CTGACCCTGA GCGCCAGGCT GGGCACCGAA
AACACCCGCG CCGAAGACTG GCTGCGTGCA CCGTTCAGCA GCCTCGCTGC CGGGCTGGTG
GGGCCGATCT TCAACAATGG CCGCCTGGCT GCCGAGCGCG ACAAGGCCAC AGGGCGTCAG
GAGGAACTGC TGGAAACCTA TCGCGGCGCG ATCATCAACA GCTTCGCCGA CGTGGAAAAA
GCCCTGAACA GCATTGGCGG CCTGGATCAA CAGCGCTACT GGCACGAAGA AGAACTCAAA
CAGGCACAAA CTGCCTTCCG CATCGCCCAG AGCCGCTATC AGGAAGGCGC CGAGGACCTG
CTCACCGTAC TGGAAACCCA GCGCACGCTG TACCTGGCGC AGGATGTCAG TGTGCAACTG
CGGCTGGCGC GCCTGCAGGC GAGCATTGCG CTGTACAAGG CACTGGGTGG GAGCTGGCAG
GTGCACTGA
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| Protein sequence | MKPSLSVLTA CLLLSACQTP APPPDSGIQP PASWAFAENA AAQRSDVRWW QQFGSPQLDR
LIEQASRDSH EVAAAMARVR QAQASAIIGG APLLPELAFD LRGERNRFLR NSDRKANPSD
DNNTNNFTSD LTASYEVDFW GGIAAGRDSA LQGLRASQFD QATVELTLLA NVADRYAQTL
AAREQGRIAE LNLANAQDVL RLVQTRYESG SATALELAQQ KNLVATQQRE LPRVQQLANE
QLITLAALLG QPVQNLHLAD QPFDTLNWPD IGAGVPSELL TRRPDLAKAE ADLAAAQANV
TVARAAMLPK LTLSARLGTE NTRAEDWLRA PFSSLAAGLV GPIFNNGRLA AERDKATGRQ
EELLETYRGA IINSFADVEK ALNSIGGLDQ QRYWHEEELK QAQTAFRIAQ SRYQEGAEDL
LTVLETQRTL YLAQDVSVQL RLARLQASIA LYKALGGSWQ VH
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