| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_1421 |
|---|
| Symbol | |
|---|
| ID | 3366920 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | - |
|---|
| Start bp | 1607964 |
|---|
| End bp | 1609370 |
|---|
| Gene Length | 1407 bp |
|---|
| Protein Length | 468 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 637651764 |
|---|
| Product | Phage integrase |
|---|
| Protein accession | YP_234510 |
|---|
| Protein GI | 66044669 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4973] Site-specific recombinase XerC |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.602834 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACCGA TGACGCTTCC GGAACTGACC CAGGAATACA TACTCACTCA TGACCTTAGG
CCCGACACCG TCAAGATCTA TTGGGCTGCC ACAAAATCCT ACGTCAGATT CTTCGGCGAC
TGCCTTGCCT GTGAGACGAC CCACCGCGAC ATGCTTGACT GGCGCAGGTC TGAGCTCGAG
CGAATCTCCA AGCGCAGCTG GAACACGTAC TCCAGCCATT TGCGCACCAT CTACGGCTAT
GCAATCGAGC ACGGGCTGCT GGAGCTGGTC GTCAACCCAC TTAAAAACAC GCGTGTGATG
CCGCCCAAGC GCCCAAAAAA GACAGTTGCG AACGACGCAA GCGTCCGCGC TCGTAACTGG
CTGAGGATGC TGACCGCAGA GGAGCGTGCC ACCGCGAAAC GGACAGAAAT TACACCTGCC
TGGTTCTGGC TGAGCGTGTT CGAAACGTTC TATTACACGG GGATCAGGCT CAACGCGCTG
CTATGCCTGA GATATGCGGA TGTATACCTG CGCGACCGGC TGATCAGAGT CAGAGGCGAA
ACGGAGAAGA CTCATCGTGA GTTCCTGATT CCTATCCCGG ACGGCCTGAT GGCTCAGCTA
GAAACGCTTA TGCAAGCAGC GAAGGCCTTG AGGTTCCAGC CAGGTGACCA GTTGTTCAAC
GTAAACAGAT TTTCAGGCCA CTACCGCCGC CATGAGATGA ACTCCAACCA AGTCGAGGCG
ATGTATAAAA AACTCACTGC GATGACCGGT ATACGGATGA CGCCTCACCG CTTCCGACAC
ACGATCGCCA GTGAGCTAAT GACGCTACCG GAGCGCAACA TCTATCTGAC CAAGAAATTG
CTGAACCACT CGAATATAGC TACCACGATG GATTACATCG AACCCGACTA CGACATGATG
CGGGAGGTGA TGAATGAACG AGGAAAGCGG CCGGCCAAAA TCAGCTACAT GGCAAAACCG
GATGCGACGC TGCGTGCTGA TAGACACCGA TCAATATCTG CTCCAGTTAA GGACTTGACT
GCGTCGACTA AGACTCGCGG AACAACTGCA GAAGCCGAAA GCTCAGCTGG CCAGGCCTTG
GCCAGGCCCC GCGCACTGCC TACACCGGTC TCGACCATGT GCCCATCAAC TGCTCCAGAT
ACCAGGACAG TGAACCGCGA CGAGACGCCC TCACCCACTA GTGACCGCGA CACCGCAGTC
AGCCAGCTAC CGTTAGGCTG CTCTAGTCCA GAAGATCTGT TGAGAAGCTT GGGGGAACTC
ACCAGGTGGG TACAGAACAA CATTGCCGGC GGAGGAACTG GTGCTGAACC AGTGATCGAG
GAAAGACCTG TCCCAAGCCA GGATGCTCGG CATCTACGCC CGGAAATGCT GGAATTGGCG
GGATGGATCG GCAGGTCAGG AACTTGA
|
|---|
| Protein sequence | MKPMTLPELT QEYILTHDLR PDTVKIYWAA TKSYVRFFGD CLACETTHRD MLDWRRSELE
RISKRSWNTY SSHLRTIYGY AIEHGLLELV VNPLKNTRVM PPKRPKKTVA NDASVRARNW
LRMLTAEERA TAKRTEITPA WFWLSVFETF YYTGIRLNAL LCLRYADVYL RDRLIRVRGE
TEKTHREFLI PIPDGLMAQL ETLMQAAKAL RFQPGDQLFN VNRFSGHYRR HEMNSNQVEA
MYKKLTAMTG IRMTPHRFRH TIASELMTLP ERNIYLTKKL LNHSNIATTM DYIEPDYDMM
REVMNERGKR PAKISYMAKP DATLRADRHR SISAPVKDLT ASTKTRGTTA EAESSAGQAL
ARPRALPTPV STMCPSTAPD TRTVNRDETP SPTSDRDTAV SQLPLGCSSP EDLLRSLGEL
TRWVQNNIAG GGTGAEPVIE ERPVPSQDAR HLRPEMLELA GWIGRSGT
|
|---|
| |