| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_1148 |
|---|
| Symbol | |
|---|
| ID | 3366642 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | + |
|---|
| Start bp | 1299152 |
|---|
| End bp | 1300171 |
|---|
| Gene Length | 1020 bp |
|---|
| Protein Length | 339 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637651489 |
|---|
| Product | branched-chain amino acid aminotransferase |
|---|
| Protein accession | YP_234240 |
|---|
| Protein GI | 66044399 |
|---|
| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0115] Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase |
|---|
| TIGRFAM ID | [TIGR01123] branched-chain amino acid aminotransferase, group II |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.82105 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCAAG AAAGCATCAA CTGGGACACT CTGGGTTTTG ATTACATCAA GACCGACAAG
CGCTACCTTT CTCATTGGCG CGACGGTGCC TGGGATCAGG GCTCACTGAC CGAGGACAAC
ACGCTGCATA TCAGCGAAGG GTCGACCGCG CTGCATTATG GCCAGCAGTG CTTCGAGGGC
CTCAAGGCCT ACCGCTGCAA GGATGGCTCG ATCAATCTGT TCCGTCCCGA TCAGAACGCC
CAGCGCATGC AGCGCAGCTG CTCCCGTCTG TTGATGCCCC ACGTCCCGAC CGATGTCTTC
ATTGAAGCCT GCAAGCAGGT GGTCAAGGCC AACGAACGCT TCATCCCGCC TTACGGTTCT
GGCGGCGCGC TGTACCTGCG CCCGTTCGTC ATCGGTGTGG GTGACAACAT CGGCGTGCGC
ACGGCGCCTG AATTCATCTT CTCGATTTTC TGCATCCCGG TGGGCGCCTA TTTCAAGGGG
GGCCTGAAGC CGAACAATTT CGTCATCTCC GGCTACGACC GCGCTGCGCC CAACGGTACA
GGTGCAGCCA AGGTCGGCGG TAACTACGCC GCCAGCCTGA TGCCCGGTTC CGAAGCCAAG
AAGCACAGCT TTGCAGATTG CATCTATCTC GATCCGCAGA CCCATTCCAA GATCGAGGAA
GTGGGCTCGG CCAACTTCTT TGCCATCACC AAGGATGATG TGTTCCTGAC GCCCAAGTCG
CCATCGGTGC TGCCGGGTAT CACCCGCCTG TCGTTGATCG AACTGGCGAA ATCCCGTCTG
GGCCTGACGG TCGAAGAGGG TGATGTGTTC ATCGACCAGC TCGGCGAGTT CAAGGAAGCC
GGCGCATGCG GTACGGCTGC GGTCATTACT CCGATCGGCG GGATTTCCTA CAAGGACAAC
CTGCACGTGT TCTACAGCCA GACCGAAGTC GGTCCTGTGA CTCAGCGTCT GTACAAGGAG
CTGACCGGCG TTCAGTCCGG TGACATCGAG GCTCCAGCCG GCTGGATCGT CAAGGTGTGA
|
|---|
| Protein sequence | MSQESINWDT LGFDYIKTDK RYLSHWRDGA WDQGSLTEDN TLHISEGSTA LHYGQQCFEG
LKAYRCKDGS INLFRPDQNA QRMQRSCSRL LMPHVPTDVF IEACKQVVKA NERFIPPYGS
GGALYLRPFV IGVGDNIGVR TAPEFIFSIF CIPVGAYFKG GLKPNNFVIS GYDRAAPNGT
GAAKVGGNYA ASLMPGSEAK KHSFADCIYL DPQTHSKIEE VGSANFFAIT KDDVFLTPKS
PSVLPGITRL SLIELAKSRL GLTVEEGDVF IDQLGEFKEA GACGTAAVIT PIGGISYKDN
LHVFYSQTEV GPVTQRLYKE LTGVQSGDIE APAGWIVKV
|
|---|
| |