Gene Psyr_0527 details

Gene Information

• Locus tag: Psyr_0527
• ID: 3366003
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. syringae B728a
• Kingdom: Bacteria
• Replicon accession: NC_007005
• Strand: -
• Start bp: 589549
• End bp: 595677
• Gene Length: 6129 bp
• Protein Length: 2042 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 637650867
• Product: type III effector HopAC1
• Protein accession: YP_233635
• Protein GI: 66043794

Plasmid Coverage information

• Num covering plasmid clones: 0
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 18
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGACGCAAA CACCACCCTC TTTGGATTTC AACCTTTCAA CGCCGAGTCC TGTACCGATG 
ACGCCCAGCG ATACCTGGGC TGGCGCGTCC GCAGCGCTGA AAAGGCTCGA CGAACTGCGC 
ACCCTGCTGG CCAGGGAGCT GGACGCGCTG CCCCAGGCTG GCGAAGCCCT GCTGAGCGCC 
CTCGACGGCG CTGACGTGTC CGAACGCGAG TTGCAGATCT TCGGCCTGTT GCAACAGATC 
GACGACTACT GGACGGACCC GGGCGAAACC GGTGAAAGCC GCCGTGATCG CCTCTTGCCC 
GCCTTGCAAA GGTCCCTGCA TGACGAAGCT CGCGTCAGGA TTCACGAGCG CGATTTCGAC 
AGTGGCTACC TGGCCTGCCT GCCCGACTCG CCCGATCAGG AAGGCCCGGC GCTCGCCTAT 
TCGACGGTGC GGGTGCAGTT GCATGATGAC GAACAGATTG AAATGGCCGG CGTGCTGGTG 
ATTTCCCAGG ATCAGGGGCG CACATTATTG ATGCTGCCAG GGCTCGGGAT CAGCGGTTTT 
GCCACGCAGG CCATGCTGGT CGCAACCCTT GTGCAGTGGC TCAACACGCC AACGCTGCGC 
GATGCGCTGC TCAGCAACGC GCAACGACAG CATCAGGAGC GTTTGACCGA GATACTCCAG 
GACGCCGACC TGTACCTGGA ACCCTTCACG GCTGCCGACG TGCAATTGCA GCCCGTTGTT 
ACCACGGCAC CGTTCATTCA CGCCTTCGAC CGGTTGCTGA ACAAGCAGCG CAACGACATC 
CGTTACGCCT GCGAACAGCC CGGCACGGCG GATCGGCTCA AGCGTCAATC GCTGATCCAG 
CAGGCCATCG ACATGCCTGG CCTGTTCGGC CCGGCTGCCA TGCTCGAGCT GCGTGAACTG 
ACCAACAGAC GACGTCAGTA CCAGCGTAAC CTGCCGGAGT GGATGAAGAT CGCCAGCGCG 
GCTGACCTGC AGACCTATGC CCTGCACCTG CAACGCTACG ACGCGGCGCA TACTGCGATG 
CTGAGTGTAT TGGGCAGCGC GGCGTCGCCG GAGCGGTTTG CCGAAATGCA GTTGCGCACC 
CGCCTGGCCA ATGACCTGGG CCATGATCTG GACCCGCGGG ACTTGACCAT CGACACCCGC 
CGCACGCTGC CAGCGACGAG TGAGACCTAC CGCGTGAAGC TGCCGCTGAC CGAACTGGCG 
CTCTATGGCC TGCATCCGGA TGACGAGACA GCGGGCTCGG ACTTCCTCGA CCAGACGCTC 
ATCACCCTCG ATGGCCAGCC GCTGGACGCC GCCTATTCGG ACTTGAACCC GGCCTACCTT 
GCCAGAGTGA TTGACGAACT CGATCTGCGC GCGGTGTTTG GCGATTTTCA ACGCCAGGCC 
TATCAACAGG AACACAACCA ACAGATGCTG CGCGCACTGG CGCGTGTCCG ACTGACCACG 
CTCGGCTGGG CGGCGAAGAT GCAGGGGCAT ATCCGGCCCG ATGACTTTGC CATTGTCGCA 
GCGCTGACCA GCGCGGCGAC GGGTACGCAT GATCCCGCGC TGCGCGTGCA GCAGATCAGG 
CTGAACGACC GCAACGTGAT GGCCAGACTG CTGGTGTGTC GCAAGCAGGA TGCTCAAGGC 
CGGACGCAAC GGCTGATCAT GTTCGCCAGC GAGGCGCCCG GGCAGCAGTA TTTCAAGGCC 
TTCGACACCG ACACCCAACT GCTGCATGAG ATGGTCGGCT GGACCGCATC GCCCGCAATG 
ACGGCCTGGC TGCTTGATCA GGTAGAGGTC GCTGCCCGCC CGGAACTGGC TGCGCAACTG 
ACGGCGCTGC GCGAGAAACC CCAGCCCGCA AAGGACTTCC TGCAATTCAT CGATCACCCC 
GACTGCGAGA CGGCACTGCG CCGTTTTACC GACGAGCAGA CCCGCGTATT GCTCTCCGAA 
CAGGCCCGCC ATACCCCGGA CTGGTACCTG CGCGCCAGCC GCGCCCAGCG TCGGGAATTA 
CTGGCCCTTG AACGCGCCAT CAATGGCGCC CTCGACAACT ATCAGGCCCA GGCGCACACC 
GGGGTTCAGT CGTTCAAGGA CTACGTACAC CAGCGTGCCA GCCAGCAGCT CGGCAAACTG 
CTGGGCGTCC CCGCAGGCAC GGTAGACCCC GATCAGATCG TGATCACCAG CGAGCGCGAA 
ACGCAGACCT ACACCGACAT GCTGCTCAAA GGCTACAACG ACAGCATCGA CCCCTTGAGC 
ACTTCGGCAG CTACCGACGC CACGTTCAGC GGCCCGCCGG GGATCGACCT GAGCGCGCTG 
TCACCCGCTG CTGTCGCAGG TTCGGTACGC GGCCAGTGGC TGGCGGACGA GTACATTGCG 
CTGATCAGAA ACACCCTGCT GAACAGCGAA AACGATGGCT ACGCCTACCG TCGCCAATAC 
AGCGTGATGA TCACCCAATT GCAGATGAAG GCGGCTGCAC TGCGCAGCCT GCTGAAAGGT 
CATGTCGAGG CCGCGCAGTA TGCCTGGCTC ACGCAATCAC TGGATAACGC GCACCTGAGC 
GACCCGGCCT CACGCGAGCG ATATCCCCTT TACCCCCTGC AAATACATGT GGATAAACCC 
CTGATCGCCT CGGGACTGAC CGATGTCGAT CAACTGGTTA TCCCCAGCCC GCTGCTGACC 
CACATCGAAA CCGTTCAGGG CTGCCTGGTC ATCCTGCCGA CACAGATCCG TCACGCCGCG 
CTGCTCTATA CGCCGCAGGC ACCTGACGGT ATCGAATTCC GTCTGTTCAG CGACTTCGTG 
AGCTCGCTGA ACAGCGAAGG GATGATCGAT TACTACAAGG ATCGCTGCCG CATCAAGGCA 
CGCCGGACCC TGTCGTTCTT CCTGCGGGAC ATGCAAAAGG GCAACGCCAA CAAGCCTCCG 
GTCATCCCCA GGGCATTCAT TGCAGACGTT GCCGATACCT GTTTCAACCG GCCGCTGGAG 
CGCAGGCTGC GTGACGTGGA AGAAACCACC ACCGGCCGTA ACGACATGCT GACGAAGCTG 
ATCCGGGTCA GTGTCGAAAT CGTTGCCACG GCCCTGACCC TGCCCTTCCC GCCGGCAAGC 
TTTGCGGTGG GCAGCCTGAT TTCATTGCAT GACAGCGGGC AGGCACTGGC CGCGCTGAGC 
GCAGGCGACC GGGAGCGCGC CACGAACTAC ATGCTGTCGG CCCTGCTCAA CGGCCTCGGT 
GCAGGCAGCG ATTTGCTGGT GGGTCTGAAA GGACTTGGCG GCGCGTTGCA CCAGCTTGAG 
AACAGTCAGC ATTCGACCCC GGTACTGCGC TCGTTCCAGC GCCAGCCTTC CCTGCCGCGT 
TACGAGGATC TGTACCCGGT AGAGCTGCAA GAGCAAGTAT TTCTGCTCGG CAAGCCCAAC 
GTTCATGGGC ATGCTGCGAT TTTCCAGGCG TCCCATGTCG CCTCGGCACC GCCGCTGGCA 
ACCGGCCAGT TCGCTGCGCG CGAGATCGGG GGCGCCTGGC AGCCGCTGCT CCCGTTGCCC 
CCGACGGCAC AGCGCGCGCC ATCAGGTTTG CGCATCGATC TGGCCGTCGA CATCTCTCTG 
GAGAACGTGC CACGTATCGC CGAGGGTCAC GCAAAAGGCG TGCATGCGAT CAATGGAAAA 
TACTATATCC AGCTCTCAGA CCAGGCCTTT GAGGTTCAGT ACGACGCCTA CTGGCAGTAC 
TGGCAGATCA TCGACCCGGC CAATCCGTTC GCCTTCTTCG GCAAACAGCC GGTTCGCCTG 
AATGATCAGG GCCAGTGGCT GCTTGTCGAA CGGCAGCGCC TGCGCGGCGG CGGGCTGGAC 
ACTCCGGGCA CTTATCGACC GCTACCTGAG CAAGCCAGCG CAAGCTCAAG CTCGCTGAAT 
ACCTTGAGCG ACTATGAGAT GCCGAGCGGC ATGCGCGCGC ACCTGGACAT CGTCATCAAC 
AAGGAAGTCT TCGACCCGAC CGGCGCAGGC CTGGACGTCT ATTTCGAAAC GTATTTCACC 
GAGGTGCGCC AGACCTTCAC GGCGCGTCGG GAACAACTCT ATCAGGACGC CCAGGCCTTT 
TTTGCCCGAT TCACGCCTCC ACCCAGGCCG ACCCTGCCCG CCTATGGCCT GCCCGGCAGC 
GTCGACACGC TCATCAAGCA CATCTTCAGT CACAGTAACG GACTGGTGTT CAGCGAAGCC 
CCGAAATCGG TGGCCAGCAA GCGTCTGCTG CTGCTCAACA TGCCCTTGCT CGCAGAGCAG 
CGTGTCGAGG TGCTGTACAT CGAGCACCTG CTGACCGACA AACACCTGCG CAAGCTGGCC 
AGGTATCGCC AACTGGGCAA AAAGAGTCGC TCCGGCTCTC ATGAACTCAA GTATTACCTG 
CAAGAGACCA ATCGCGGCGC CCTGAACAAC GCCAGCAGCG AATTCGATTA CTACCACCTG 
ATCAAGGCAG CCCACCGTTA CGGGATCGAG GTGCGCCCGC TCAGTTCGTC GATCAGCTAT 
CCGTTTCTCG GCCATACAGT GCTGAGCGCT GCCGATGACC CGGCAGCCGC CATGAAAATG 
AGCAATTTCT TCGGGCACAG GCTCATCAAC CACGATATCG AGCCGGCCTC TGCCAGGCGT 
TGGGTAGCGC TGCTCGACCA GAAGCTGGCC ACGACGCACG ATCAAGTGCC CGGCATCGCT 
GAAATGCAGG GCGCCGTCAG TGTGCAGGTC CAGGACATCC CCGCCGGACG TCCGACCCGC 
ATCAGGCAAG GCGCTGGTGA GGCGCATGAA AACACGCCGT CTCACTGCGA CTTCAGCATA 
GCGTTTGCCG ACCCGACGCT GCCCGCCAGG CCGCTGCCCC CTGCCACTGC TCTGGATAAC 
ACGTTGATCC GCGAGCTGGG CGACCCGACC GCGATTGCCG AGGGTGAGCG CTGGGCGGGC 
GAGTACGGGT TCGTCCTTGA CGAAAACCAT ACCTGGCTGC GCGTGGAAGC CGATGACTGG 
AGCGTTGACA GGTCGATGAC GGCCATCCAG CAATCGCTGA CCGATGCTAC CTACGAAATG 
CCGCCGGATA CCAGAACCAC GCTGCATCGC CTGGCGAACT TCGAAAAGAA GGGGCTCGAT 
ATGGAGTATT TTTTTGAAGA CATCGAACTC GACACTGTGC GCAATACGTT CGACCTGCGG 
CGCAAGAATC TGCAAAAGGA CGCCGCCAGC ATCAGTGCCG CGCAACTGCC GCCTCGCCCG 
ACATTGCCAG CCATTGAACC CCAGACAAGC ACTGCCGGGC TGCTTGAAAC CCTGTATCGC 
CATACCGAAG GCCTCGTCAT TGGCGAGTCA CACTCTTCGG TCGCCAGCAA AAAGCTGATC 
ATCGACAACC TGCCGTTGCT GTCGCAGCAG AACGTCAAAA CGCTGTACAT GGAGCACCTG 
CTGAGCGATC TGCATCAGGC GGACCTGGAT CGTTTCCTCG AAACCGGGCA GATGAGCAAA 
ACCCTGCTGC ATGACCTGAA AACCCTGGAC CGCGGGCATC ACACCGACCC GAACGGCGTC 
TACACGTTCG AACAGCTGGT CATCAGGGCG CGGCAGCAGG GCCTGGAGAT TCGCGCCATC 
GATTGCGCAA GCAGTTACCA CCTCAAAGGC ATCGCCGAGG ACGAGCCCCT TATCCGCCAG 
CAAATGATGA ATTACTTTGC CTCACGCACG ATCCGCAGGC ATCAGGACGT GATGGGCTCG 
CACAAGTGGA TCGCGCTGGT TGGCAACAGC CATTCCAATA CCTACCAGGG CGTCGTGCCT 
GGCATTGCCG AACTGGAAGG AGGAATCGGC CTGCGGGTCG TCGATGTGGC TCCGGGCCAT 
TCGAGGGGTA TAACGCTGGA TCAGGGAGAG CTCGTCTCGG GTGGCATAGC GGATGACAAG 
GTCTACATCA AAGCTGATTA TCGAGTGGAG ATGGAGGTGC CGCGTCCACA GCCGGCCCGG 
CTGCCGAGCA TCGAGAAACG CCTCTCCCGT CCGGGCATGT TTCTGGTGCA GGAGGGTGAA 
GGCAACCTGC AAACCATCGT CCATCGCGCG CGCGACACCT GGATTCACCG CACGCCAGTG 
CTGCGCAATG CCGAAGGCAA GCTGTACATC GAACGCCTGC GCTGGCCGCG CATCCACCTC 
AAACCCTTCG ACGATATCGA TGCACTGGTG GCGGCACTCG AAGCGATGAA CCTTACGCGC 
GCTACCTGA 

 

Protein sequence

MTQTPPSLDF NLSTPSPVPM TPSDTWAGAS AALKRLDELR TLLARELDAL PQAGEALLSA 
LDGADVSERE LQIFGLLQQI DDYWTDPGET GESRRDRLLP ALQRSLHDEA RVRIHERDFD 
SGYLACLPDS PDQEGPALAY STVRVQLHDD EQIEMAGVLV ISQDQGRTLL MLPGLGISGF 
ATQAMLVATL VQWLNTPTLR DALLSNAQRQ HQERLTEILQ DADLYLEPFT AADVQLQPVV 
TTAPFIHAFD RLLNKQRNDI RYACEQPGTA DRLKRQSLIQ QAIDMPGLFG PAAMLELREL 
TNRRRQYQRN LPEWMKIASA ADLQTYALHL QRYDAAHTAM LSVLGSAASP ERFAEMQLRT 
RLANDLGHDL DPRDLTIDTR RTLPATSETY RVKLPLTELA LYGLHPDDET AGSDFLDQTL 
ITLDGQPLDA AYSDLNPAYL ARVIDELDLR AVFGDFQRQA YQQEHNQQML RALARVRLTT 
LGWAAKMQGH IRPDDFAIVA ALTSAATGTH DPALRVQQIR LNDRNVMARL LVCRKQDAQG 
RTQRLIMFAS EAPGQQYFKA FDTDTQLLHE MVGWTASPAM TAWLLDQVEV AARPELAAQL 
TALREKPQPA KDFLQFIDHP DCETALRRFT DEQTRVLLSE QARHTPDWYL RASRAQRREL 
LALERAINGA LDNYQAQAHT GVQSFKDYVH QRASQQLGKL LGVPAGTVDP DQIVITSERE 
TQTYTDMLLK GYNDSIDPLS TSAATDATFS GPPGIDLSAL SPAAVAGSVR GQWLADEYIA 
LIRNTLLNSE NDGYAYRRQY SVMITQLQMK AAALRSLLKG HVEAAQYAWL TQSLDNAHLS 
DPASRERYPL YPLQIHVDKP LIASGLTDVD QLVIPSPLLT HIETVQGCLV ILPTQIRHAA 
LLYTPQAPDG IEFRLFSDFV SSLNSEGMID YYKDRCRIKA RRTLSFFLRD MQKGNANKPP 
VIPRAFIADV ADTCFNRPLE RRLRDVEETT TGRNDMLTKL IRVSVEIVAT ALTLPFPPAS 
FAVGSLISLH DSGQALAALS AGDRERATNY MLSALLNGLG AGSDLLVGLK GLGGALHQLE 
NSQHSTPVLR SFQRQPSLPR YEDLYPVELQ EQVFLLGKPN VHGHAAIFQA SHVASAPPLA 
TGQFAAREIG GAWQPLLPLP PTAQRAPSGL RIDLAVDISL ENVPRIAEGH AKGVHAINGK 
YYIQLSDQAF EVQYDAYWQY WQIIDPANPF AFFGKQPVRL NDQGQWLLVE RQRLRGGGLD 
TPGTYRPLPE QASASSSSLN TLSDYEMPSG MRAHLDIVIN KEVFDPTGAG LDVYFETYFT 
EVRQTFTARR EQLYQDAQAF FARFTPPPRP TLPAYGLPGS VDTLIKHIFS HSNGLVFSEA 
PKSVASKRLL LLNMPLLAEQ RVEVLYIEHL LTDKHLRKLA RYRQLGKKSR SGSHELKYYL 
QETNRGALNN ASSEFDYYHL IKAAHRYGIE VRPLSSSISY PFLGHTVLSA ADDPAAAMKM 
SNFFGHRLIN HDIEPASARR WVALLDQKLA TTHDQVPGIA EMQGAVSVQV QDIPAGRPTR 
IRQGAGEAHE NTPSHCDFSI AFADPTLPAR PLPPATALDN TLIRELGDPT AIAEGERWAG 
EYGFVLDENH TWLRVEADDW SVDRSMTAIQ QSLTDATYEM PPDTRTTLHR LANFEKKGLD 
MEYFFEDIEL DTVRNTFDLR RKNLQKDAAS ISAAQLPPRP TLPAIEPQTS TAGLLETLYR 
HTEGLVIGES HSSVASKKLI IDNLPLLSQQ NVKTLYMEHL LSDLHQADLD RFLETGQMSK 
TLLHDLKTLD RGHHTDPNGV YTFEQLVIRA RQQGLEIRAI DCASSYHLKG IAEDEPLIRQ 
QMMNYFASRT IRRHQDVMGS HKWIALVGNS HSNTYQGVVP GIAELEGGIG LRVVDVAPGH 
SRGITLDQGE LVSGGIADDK VYIKADYRVE MEVPRPQPAR LPSIEKRLSR PGMFLVQEGE 
GNLQTIVHRA RDTWIHRTPV LRNAEGKLYI ERLRWPRIHL KPFDDIDALV AALEAMNLTR 
AT