| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_0088 |
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| Symbol | |
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| ID | 3365563 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | + |
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| Start bp | 95185 |
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| End bp | 96192 |
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| Gene Length | 1008 bp |
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| Protein Length | 335 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637650431 |
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| Product | PAS:GGDEF |
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| Protein accession | YP_233200 |
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| Protein GI | 66043359 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.10869 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTTCTTA TGGAAAAGCA GCCTCCCACC TCCCTACCCG GCACACCGAT CACTGATATG
CCCGCAGCCG CAGAAACCCT GTTAGCCCTG ATGCACGCTC AGGCAGAAGT CGCACGCCTG
AGCGAGCGTG AACAATTGTT CAGCTCGTTG CTGGTGAGTG TGAACGCTGT TTTGTGGGCG
TTCGACTGGG AAACCCAGCA CATGATCTAT GTCAGCCCGG CCTACGAGCG CATCTTCGGT
CGTTCGGCGG GCCTGCTGCT GGCTGACTAC AGTGAGTGGC GCGACAGCAT CTACCCCGAT
GACCTGAACT ACGCCGAGCG CAGCCTCAAC GAGGTCATCG AGAAAGGCTC GATCGAGGAT
CGCGAGTACC GGATCATTCG TGCGGACGGC GAAGTGCGCT GGCTCAGCGA CAAATGCTTC
GTCAGCCATC GCGCCGACGC CAGCCAGCGT CTGATCGTGG TGGGCATCGC CGAAGACATC
ACCGAGAAGA AGCAGCTCGA GAATGAGCTG CAACGCCTGG CGACCACCGA TGTGCTGACC
CAGAGCAGCA ACCGCCGGCA CTTTTTCGAA TGCGCCCAGC GCGAGTTCGA ACTGGCTCGC
CTCAATGGCA CGCCGCTGGC GTTTCTGCTG CTGGATATCG ATGACTTCAA GCTGGTGAAC
GACACCTACG GCCATCAGGA AGGCGATACC GTGCTGCAAC GCATCGCCGA AAGCGGTCGT
TCGGCATTGA GGCGGGGTGA CTTGTTCGGG CGTATCGGTG GCGAAGAGTT CGCTGCGGTA
TTCCCCGGCT GTGCGCCGGA CATGGCGATG CAGATCGCCG AGCGCCTGCA ACGCGAGATC
CAGCGTCAGA ACTTCCAGTC CGCTGGCACC ACCTTCAGCA TCACTGCCAG TCAGGGCCTG
ACCAATCTGG GCCCGGACGA CCCAAGCCTC GAAACCCTCT ACGGCCGCGC CGACGCCGCG
ATGTACCAAG CCAAACGCCA GGGCAAGAAT CAGATCGTGC TGGTCTGA
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| Protein sequence | MVLMEKQPPT SLPGTPITDM PAAAETLLAL MHAQAEVARL SEREQLFSSL LVSVNAVLWA
FDWETQHMIY VSPAYERIFG RSAGLLLADY SEWRDSIYPD DLNYAERSLN EVIEKGSIED
REYRIIRADG EVRWLSDKCF VSHRADASQR LIVVGIAEDI TEKKQLENEL QRLATTDVLT
QSSNRRHFFE CAQREFELAR LNGTPLAFLL LDIDDFKLVN DTYGHQEGDT VLQRIAESGR
SALRRGDLFG RIGGEEFAAV FPGCAPDMAM QIAERLQREI QRQNFQSAGT TFSITASQGL
TNLGPDDPSL ETLYGRADAA MYQAKRQGKN QIVLV
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