| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CNI00040 |
|---|
| Symbol | |
|---|
| ID | 3259567 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cryptococcus neoformans var. neoformans JEC21 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_006694 |
|---|
| Strand | - |
|---|
| Start bp | 11946 |
|---|
| End bp | 14221 |
|---|
| Gene Length | 2276 bp |
|---|
| Protein Length | 478 aa |
|---|
| Translation table | |
|---|
| GC content | 51% |
|---|
| IMG OID | 638258488 |
|---|
| Product | protein transporter, putative |
|---|
| Protein accession | XP_572757 |
|---|
| Protein GI | 58271202 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0201] Preprotein translocase subunit SecY |
|---|
| TIGRFAM ID | [TIGR00967] preprotein translocase, SecY subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | CCCTTTTCCC TCGGTCTCTA TCTTCTCTTG CACCTTCCAC GATGGGCTGT ACGTATATTC
TTTTCCCGCT GTGTCGCGTC CTCTTTTGCC CGCTGACAGC ACATCCCCTT GACAGTCCGT
TTCCTTGAGC TCGTCCGACC CTTCATGAGC ATCCTCCCAG AGGTCACTGC TCCGGAAAAG
AAGGTACGCG TCTTTCAACC TCTCCATCCC ATCTCTGTTC TCTGCTCACA AACTTGACGC
GTCCCTAGGT CGTTTTCAAC CACAAGATCG CCTGGACAGC CGTCACCCTC CTCATCTTCC
TCGTCTGCTC ACAAGTTCCG CTCTACGGCA TCATGTCCTC CGACTCCTCC GATCCTCTTT
ACTGGCTCCG TGCTATCCTC GCTTCCAACA GGGGTACCTT GATGGAGCTC GGTATCACTC
CTATTGTTAC TTCTGGCATG ATCATGCAGC TCCTCGCGGG TGCTCAGTTG ATTGATGTCG
ACTTTAGCCT CAAGGACGAC CGTGCCTTGT TCGGTGCTGC CCAAAAGTGT AAGCACTTTG
TCGTTTTCCT AACCAGTCCA GCAACTAACG CGACGCAGTG TTCGCCATGA TTATCTCCCT
TGGACAGGCT ACCGTTTACG TCTTGACTGG TCTTTACGGC TCCCCCTCCT CTCTCGGCGC
GGGTGTCTGT CTTCTCCTTA TCCTTCAGCT CGTTTCTGCC TCCCTCATCG TCATCCTCCT
CGATGAGCTC CTCACCAAGG GCTACGGTCT TGGTTCCGGT ATCTCTCTTT TCATCGCTAC
CAACATTTGC GAGTCTATCG TTTGGAAGGC CTTTTCTCCC AACACTGTCA ACACCGGTCG
TGGACCGGAA TTCGAAGGTG CCATCATCGC CCTCATCCAC CTTTTGTTCA CATGGAACGA
CAAGACTCGC GCCCTCAAGG AAGCCTTCTA CCGCGATCGT CTTCCGAACA TTATGAATCT
CCTCGCGACC GTCGCTGTCT TTGCTGCCGT GATTTACCTT CAAGGTTTCC GAATCGAGAT
CCCCATCAAG AGCTCCAAGA TGAGGGGCCA GAGGGGCACT TATCCCGTCA AGCTTTTCTA
CACTTCCAAC ATGCCTATCA TGCTCCAGAG CGCTTTAACC AGCAATGTCT TCCTCGTTAG
TCAGATGCTT GCCGGTCGAT TCCCTGACAA CTTGCTTGTC CGTCTTTTGG GCGTTTGGGA
GGTAGGTTTA CTTTTTTGTT CTTCTTGTGG TTCGCGTACG ATTTGTACTA ATCATCCCAA
CAAATTAGCC CATGGAGAAC AACCCTACTC AACTGGGCGC CGTCTCCGGG ATCGCCTACT
ACATGTCCGC TCCTCACTCT CTCACCTCTG CCCTCAAGGA CCCCTTCCAC ACCGTCATCT
ACATCGCCTT CATCGTCACC GCGTGCGCCC TTTTCTCTAA GACCTGGATC GAAGTCTCCG
GCTCCGGCCC TCGAGATGTG GCCAAGCAGT TGAAGGACCA GAATATGACT CTTGCAGGAC
ACAGAGATGC GTCTATTTAC AAGGAGTTGA AGAGGATTAT CCCGACTGCT GCGGCGTTTG
GAGGTGCGAC TCTTGGCTTG TTGAGTGTGG TGGCGGATAT GATGGGTGCT TTGGGAAGTG
GAACTGGTAT TTTGATGGCC ACTACTATTA TCTACGGATG TGAGTCTTTG ATTTTTTCAC
ATCGCTTACT TTCTTTGTGT TGCTGGCTTG CTGACCAGAC GTTTTCTACG TAGACTTTGA
GTTGGGTATC AAGGAGAACT CTGGTATCGA TGCCACTGGT CTCGGTGACC TCCGTGAGTA
TTTCAAGGCC CCTCCCCTCC CTCTCATTGA CCTCGGACTG AGCTGACGTC AACTACAGTC
TTCTAAGTTA TCCACTCTCC ATTCAACTCC AGTTCCTGCG GATTTCCCAT TCTTAGAAAC
AGCGTCTTTC GTTCTTCAAG TTTAGTCGAG CTTTTGGACT CAGCGCTGTT TTTGGGAATG
GTACGTCTGA GGGTAGGGGA TGGTATGTGT ATAAGGTGGG CTGGTGGGGA GAGTGTGCGT
CGTTGTAGAG AGCGAGTATG CAGGAAAGGA GGGGAAGGAT GAAAAGAAAA CCTACCGAAG
GTCTTAGAGG AGGAGGGTTA GGAATCGGAA AGTGGGAAGT ATAAGAAGTG GAGGAGGAAC
AAGTTTGTGG AAGTGGGAAG AGCGAGGTGG ATTCAGCATA TGATTTTTCC TTTTGACTAA
AAAAACGTTG TTACACCTCT CTCTTACTCA AAATGAAACA TACCTGCATG CGCTGT
|
|---|
| Protein sequence | MGFRFLELVR PFMSILPEVT APEKKVVFNH KIAWTAVTLL IFLVCSQVPL YGIMSSDSSD
PLYWLRAILA SNRGTLMELG ITPIVTSGMI MQLLAGAQLI DVDFSLKDDR ALFGAAQKLF
AMIISLGQAT VYVLTGLYGS PSSLGAGVCL LLILQLVSAS LIVILLDELL TKGYGLGSGI
SLFIATNICE SIVWKAFSPN TVNTGRGPEF EGAIIALIHL LFTWNDKTRA LKEAFYRDRL
PNIMNLLATV AVFAAVIYLQ GFRIEIPIKS SKMRGQRGTY PVKLFYTSNM PIMLQSALTS
NVFLVSQMLA GRFPDNLLVR LLGVWEPMEN NPTQLGAVSG IAYYMSAPHS LTSALKDPFH
TVIYIAFIVT ACALFSKTWI EVSGSGPRDV AKQLKDQNMT LAGHRDASIY KELKRIIPTA
AAFGGATLGL LSVVADMMGA LGSGTGILMA TTIIYGYFEL GIKENSGIDA TGLGDLLF
|
|---|
| |