| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CNH03370 |
|---|
| Symbol | |
|---|
| ID | 3259050 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cryptococcus neoformans var. neoformans JEC21 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_006693 |
|---|
| Strand | - |
|---|
| Start bp | 145821 |
|---|
| End bp | 148874 |
|---|
| Gene Length | 3054 bp |
|---|
| Protein Length | 928 aa |
|---|
| Translation table | |
|---|
| GC content | 57% |
|---|
| IMG OID | 638258147 |
|---|
| Product | ubiquitin-protein ligase, putative |
|---|
| Protein accession | XP_572505 |
|---|
| Protein GI | 58270698 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2319] FOG: WD40 repeat |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.307571 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | CAGCGAGCAC TGGAACACGC AGCATGGCAC CCAGCCACTC CCACCCCGCC CACTACCGCC
GTCCGCCATC GCCGCTCCCC GATCTGGGTG CCCCTCTCTT CTCCCTCGCC CCGTCCGCGT
CGGCGTCTGC GTCGTCTCGC ACTGCGCGGC CACACGGGGA CACCGACAGC GTACAAGACG
TAGCCGAGAT GTCACTCGAA AGCCTAACCC TCTCGCCGCC GACCACAGCA ACAACCATCA
CCACGACAGT AGCGCCGCCG ACGCCGACGA CGCCCACATC TAGTAGTACA GCGGCGGCCA
CACATCCCGT CGCAACAGGA GGCACAGCTG CAGAGTATCC AGAGACGGCG GCTGCTGGAA
TCGCAACAGG CGCAGTGTTC ACGGGAATAG GTATCAACCC TCCTACACCG GCACCGAGTC
CCGGCCCGCA TATCCGTGGA TTTGACGATA GTGATACCCA TATACGAGAG CATCTCGAAC
AACTGCTTTA TCACGGTGAT ACAACCACCG ATCCCCACGG CCAAAACCTC GATCATGTGC
AAGTGCAAGC AAAACCGCAT GCAAAACCGC AAGCGCAAGG TAAAACCCTA CCCCATGAGC
CGTACCCCTC ACCATCTCCA GCACCAACAC CAACGCCAAC GCCACAAACC GTCCTATCCC
AATACACCTC CCTCCCACCC CTCCTTCGCT CCAAATTCCT AAACCTCCTT ATCCCCCATC
TAGCACTGCA TGAAGCGCTC TCCCTTTCGC GCAAGATTGA ACCGCTTTTG AGAAGGGACT
TTTTGAGAGA GTTGCCGTGG GAGGTGGCGT TGCATGTCTT GAGCTTTGTA AGTCGCGTCT
TTTTCATTTT CTTTTCCCCC ACAGTTAGAT GGGGTGAGCT GAGTTCGATT TATTGGGAAA
CAGGTAGACG ATCCTCAAAC ACTCGCTCGA GCGGCGCAAG TCTCAAGATA CTGGAATACA
CTCTTACAAG ACGAGACGAC ATGGCGCGAT CTACTGGCTA GACATCATCA TCGGCATCGG
TATGCGAGTG GTGGTGGGAT TGGGATTTCG GGTCGGGACC CGCCGCAGCA TGCTCGGGCG
ACGTCCAGAG AGGGAATGGA AGGGATGACG GGTAAAGAGG AGGAAGAAAA GGGGTGGGAT
GTGGGTTCGG GATTAGGACC GCCTGCTGAT CCAAACGCCG CCACCAGCAC CAACACCAAC
ACCAACACCA ACACCAGCAG CAGACGGGGA GGATCTACCT CCTCAAGTCA AGCGGGGACA
AGCAAACAAC GGTCAAAAAC GCGAGACAAC GCTTTGGGAA CCGGAAGCGG GACCAAGCAA
GCATGCTGCA TCAAGCGTGT CACCCCGTTC GGTCTCGAAA AACGCGTTCT CAACCTCTCT
AGCGGTCTCA CCGGTCTCCC TCCTCCCATC TCCCCCTTCT CCCCCTCCCC CTCCCCCTTC
CCCTCCCCTT CCCCTTCCTC TCAACACTCT TACAAAACCC GCGTCAAACT CGCCTATCTC
ACCGAAACAA ACTGGCTCAC CGCCGGCGTC CTCCTCGCCA AACACCTCTC CGCCGACGAC
TCGGTCGTCA CCACGCTGAG CTTTGACGAA ACCTGGATAG TGGTAGGCAT GGCGAATAGC
AAGATACATG TGTTTAGCGC GTTTAATGGC GGGTGGAAGA GGAGTTTGGA AGGGAGGGCG
GCGCATACGC AGGGTGTTTG GGCGATGGTG CTGGTCTCCC CACCGCCGCG AACGGCAACG
GCAACGCAAA CGGCAACGGC AAATCAGATG CAGATGCAGG AGCAGGATAT GAAGCGGATG
AGGGGAACGA GAGGGATGGG GTGGTATGGC GCCCAGGCAT CGGCATCGAC GTCGACGTCG
ACATCACCAA ACGGTTGGTT CGGCATCAAC CCCCCATCCA GTTATCCACA CCCCCAAACC
CAAACCCAAA CCCAAACCCA AAGCGAGACA CAAGAGAACG AGACGCCGTA CCAGCATGGC
CGCGAGAATC AAAGCAGAGG CCAAGACCAA GGTGGAAATG AAAATGAAGA TGAAGACGAG
AATGAGGGAA GCAATTTATG CGGTAGCGTA AGAGGGTGGC AGGGGTTGAA AACGAGTTTG
GTAGTCTCGG GCGGTTGTGA TAAGCAAGTC AAAGTATGGG ATGTCGAAAC CGGGTACGTT
TCCCCGACTT CTCCCCCCCC CCCCCCCCAA CCACATGCTG ATCGGCGCAA CTTTTTTTAG
CCAATGCATC CACTCCCTCC CCGGCCATAC CTCCACCATC CGCTGTATCA AAGTCCTCCC
CCACCGGCCT ATCGCCGTCT CCGGCTCCCG CGACTACACT CTCCGCGTAT GGGATATCCA
GCGGGGGCGA TGTCTGCATA CTCTGAGAGG CCATACGAAG AGCGTGAGGT GTGTAGAGAT
TTGGGGGAAT ATGGCTGTTT CGGGGAGTTA TGATAATACC GCCAAGGTAA GTCCAAAACT
CCACTCTCTC TCTCTCTCTC GTACCTTGTC CATACGCTAA CATGGAATAC ACAGTTGTGG
AACCTCGATA CAGGCGAATG CCTCCAAACA TTCACCGGCC ACTACTCCCA AATCTACTCC
ATCGCATTCA ACGGTTCCCT CGTCATCACC GGCTCCCTCG ACTCCACCGT CAGGGTCTGG
TCCCCGACCA CTGGCGAATG CCTCGCCCTC CTCCAAGGCC ACACCGCCCT CGTCGGCCAA
CTCCAACTGT CCGGCTCGAA ACTCGTGACC GGCGGTTCTG ACGGCCGGGT CATCATATTC
GACCTCTCCT CCATGTCCTG CATCCACCGT CTGTGTGCGC ACGATAACAG CGTGACGTGT
TTACAGTTTG ATAAGCGGTT CATCGTCTCC GGCGGGAACG ATGGGAGGGT GAAGCTGTGG
GATGTGAAGA CGGGCGGGTT TGTGAGGGAG CTGACGAAAC CTTGTGATGC GGTGTGGAGG
ACGAGTTTCA GAGGCGAGAG GATTGTGGTG CTTTGTCAGA GAGAGGGGAG GACCTGTTTG
GAGGTGGTCA GTTTTAGACC GGGAGAGGGG GAGAGAAGGG GGAAGGGGAT ATGA
|
|---|
| Protein sequence | MAPSHSHPAH YRRPPSPLPD LGAPLFSLAP SASASASSRT ARPHGDTDSV QDVAEMSLES
LTLSPPTTAT TITTTVAPPT PTTPTSSSTA AATHPVATGG TAAEYPETAA AGIATGAVFT
GIGINPPTPA PSPGPHIRGF DDSDTHIREH LEQLLYHGDT TTDPHGQNLD HVQVQAKPHA
KPQAQGKTLP HEPYPSPSPA PTPTPTPQTV LSQYTSLPPL LRSKFLNLLI PHLALHEALS
LSRKIEPLLR RDFLRELPWE VALHVLSFVI SRYWNTLLQD ETTWRDLLAR HHHRHRYASG
GGIGISGRDP PQHARATSRE GMEGMTGKEE EEKGWDVGSG LGPPADPNAA TSTNTNTNTN
TSSRRGGSTS SSQAGTSKQR SKTRDNALGT GSGTKQACCI KRVTPFGLEK RVLNLSSGLT
GLPPPISPFS PSPSPFPSPS PSSQHSYKTR VKLAYLTETN WLTAGVLLAK HLSADDSVVT
TLSFDETWIV VGMANSKIHV FSAFNGGWKR SLEGRAAHTQ GVWAMVLVSP PPRTATATQT
ATANQMQMQE QDMKRMRGTR GMGWYGAQAS ASTSTSTSPN GWFGINPPSS YPHPQTQTQT
QTQSETQENE TPYQHGRENQ SRGQDQGGNE NEDEDENEGS NLCGSVRGWQ GLKTSLVVSG
GCDKQVKVWD VETGQCIHSL PGHTSTIRCI KVLPHRPIAV SGSRDYTLRV WDIQRGRCLH
TLRGHTKSVR CVEIWGNMAV SGSYDNTAKL WNLDTGECLQ TFTGHYSQIY SIAFNGSLVI
TGSLDSTVRV WSPTTGECLA LLQGHTALVG QLQLSGSKLV TGGSDGRVII FDLSSMSCIH
RLCAHDNSVT CLQFDKRFIV SGGNDGRVKL WDVKTGGFVR ELTKPCDAVW RTSFRGERIV
VLCQREGRTC LEVVSFRPGE GERRGKGI
|
|---|
| |