| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CNG02350 |
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| Symbol | |
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| ID | 3258976 |
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| Type | CDS |
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| Is gene spliced | Yes |
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| Is pseudo gene | No |
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| Organism name | Cryptococcus neoformans var. neoformans JEC21 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_006692 |
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| Strand | + |
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| Start bp | 669506 |
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| End bp | 675523 |
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| Gene Length | 6018 bp |
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| Protein Length | 1671 aa |
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| Translation table | |
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| GC content | 50% |
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| IMG OID | 638257855 |
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| Product | SSD1 protein, putative |
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| Protein accession | XP_571960 |
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| Protein GI | 58269608 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCGATC CTGTGTCCCC AACTCCGGAT CATCAGCCTC AAGCCACCCT TGCGCCCCCT
CCGGCCCATC CTTCTCGTCC AAGTTCTGCA AACTCTCAAA AGAGTAATTC TTCTAGGGGT
CGTGGTAAAA ATGCAAATGG AGGATCATCT AACATGTCTC GAACCAACTC AAACACTTCT
GGCCAGTCAG ACAGTGGACG AAGCGATAAA AAGAGGCAGA GCGGCCCCAC AACCACAATC
AGCGGTGGTG TGAGTTTGGG TGTGAGTGGA GAGGTACCTC AGCAAAGCAA GAAAGGAAAA
GGGAAAGGAA AGAACCAGGA TAAGGAGAAG GAAAGTGAGA AAAAAGGCGC TTCTTCGGAG
GTCGAAAAAC CTCAGAAGAA CAACAGTCAG AAAGGGAGAA GGTCGGCCTC CGGGAGAAAA
CCGCATCTTA CCAGTACAAA CGAATCCTCG CGTACTGTGT CGCGAAACTC GGAGGGTGAA
AACATGCCGG CGGATGCGGG TTCAGCGCAG TCTGCACCCG GGCCGAAATC GATCCACGCT
CCCGTGTCTG CTCCAAGAAC TGCAATCGAA GCCGCGGTGG AGGCTGCAAC CAAGAAGCAC
AGATCACAAA CAGGTGGCGA TGCTCTTGCG AGCTTGCAGA AGATGATTTC TGATCTAAAG
ACCCTACCTG CCACCTCTGG ACCTGCAAGT GGGAGTTCTG CCGGATCGAG GTCGACTAGT
GTCACTCGGG ATCCTCCCTC CTCTTCTTCG GCTAAAACCG AGCCAATCGC TATTCCTAAT
GCTCCCAACT CGGGATCTCA CAAGACTCTG AAGGCCGACG CGCCAACGTT CACCCCTTCC
TTCCAATCAT TCTCTCCGGT TGCCTCAACA TCAGGTCTTT CAGTCTCTCC CAATACCACC
ATGCCGACAC TCACCCAGTT GCATCCTCGC TCTCAGTCTC AAAGTAACGG GGCCCATCAT
CGCAGAAATT CTGCAAGCTC CATGTCAAGC GTGAACTTTG CCCCTCCCTT CAATCCATCT
CCTATCCAGG CCTTTGGGAA CCCTCTTCCT CCATTCTACC AGACGCCATT ATCAGTCCAC
GCCGAAGCGG ACGGCGAAAG CCTTTCACCA TTATCTTTTG CACAGCATGC TAGCTTCCAG
TATCAACAAC AGCAGCTTCT TGCAGCTCAG CAACAGCAGT ATCAGTACAT TCAACTTCTT
CAAGCACAGC TCGCCGCTAG TCAGCTTGCC CATCAACAAG CCCAGCAAGC TGCACAGCAC
CAGAACCAGC AGATGGGAAA CTTCATTGCT CCCCGTTTCC AAGCGCTTGC AGCTCAAAGA
GCTGCCTCTC AGCAACAGCA ACAAGCCGCT CAGCTTGCGC AGGCCCAACA AGTATTCGAG
CTTCAACAAG CTCAGCTGCT TCTACAACAA GAGGAAGCCA CTCGGACATC CGTCCGCGCT
GCAGCGGAAG CGGCTCACCC TCAGGATCAG CCTGTATTCG AAGAGGAATC CCCTGAACTC
CAACCCCATA CCGTTGGACC GACCGGTAGA CCTCAGCTTG CTCCTTCCTT TACCTTTGGA
GCTAAATCGA AGCATGGCGC GACGGAAAGT GTGTCGGAAC GAGGTTCCGG AAGAGAATCG
CTGTCGCCTG CTCAAAGCAG TCGGTCGCCT ATTGTGGTGA ACCGAAGCGA AGGTATTGGA
GGTGCCGCTG CCACTGGACT TGCAGGTCTG GCTGCTAGAG CACACAAGAG AACGGGGAGT
GAAATGTCAT CAGTTTTACA GCAGCAGGTA AGTCTTTTCC AGGGCTGCTA TTTACTCACA
CAAGCACAGT TTGCGATACA ACAAGAGATC GAGGCCCTCC AAGCTAAGCA GAAGGCCCTC
ATGCAACAGG ATCTGACCCA ACAAGGCGAC AACCCTCTTA CGCAACTGAA CACTGCATAC
GCACAGAAGC AAACGCCTTC TCAGACCCTC TCCCGCCATC GTCGTGTGCA ATCAAGCTTG
CCGTCAGCTT CAGTTCCTGT TGACTTTGAA CGCGAACAAG GCCAACCTCG TCCAATGAAG
TCTGTCGGCG AAATGCCCCC TCCACCTATA CCATCGGGTC ACGGAAGGCG CCACAGCGTC
AACATTCTCA ATAAGGCTGC CGGTTCTGGT ATGGGCTTCG GTTTGGCGGA TGATATACCT
GAGGATGTTG TGGCTCCCTC TGGACATCGT CGATCCAGCA GCCGATCGGG ACTTGAAAGC
GGCAGCTGGC GTCTTGGTGC ATCGTCAGGC AATGCTCAGA GCAGTCAGAA CCAAGTTGCT
GATCTTGCTG CGGCACAGGC CCAGCTTCAG TCTCTGGCAC AGTTCCGGGC AGCTGCTGGT
GGGGGGCACT CCAAGATGGC TTCGTTCAGC TTCCCCAATA TGTTACCAAA CTTGCTTGCC
GCAACAACTT TGCAGGCACC GGTTGGCCAA TCTCTCTGGC AACAACAACA GGCATTTCAG
ATGCAGTTGC AGCAGACAAC TCAGGGACCT CAACGCAAAT CTCTCTTTGC GCCCTATCTT
CCCCAAGCAT CATTACCGCC TCTTCTCCAG GCCGGTAAAC TCGTTGTTGG CGTACTGAGA
GTCAATAAGA AAAATCGATC CGACGCTTAT GTCGCTACAG ACGTTTTGGA TGCCGATATA
TACATTTGTG GTTCAAAGGA CAGGAACAGG GCGCTTGAAG GTGACATTGT CGCTGTTGAA
TTGCTCGATG TTGATGAGGT GTGGAGCACA AAGAAGGATA AGGAGGAGAA GAAGAGGAAG
AAGGAAGAGA ACGCGACATA TGACCTGAAA CCTTCGACTG TGAAAAAGCT TGAAAAGAAG
AAGGATGATG TGGAGGTTGA GGGTCAGGGC TTGACCTTAT TTGACGATGA AGAAGTAAAT
GACGACACAA AGCCTACTTA TGCTGGTCAC GTCGTGGCTG TGGTGAGTTT TTTCTCCATG
CATAATGCAG TGGAATTGTC TGATATGTTT CCGGTCTCAG GTTGAGCGAA TGCCCGGCCA
GTTATTCTCC GGACAGCTTG GCGTTCTCCG TCCATCCTCA GCCGCCACAA AGGAAAAGCA
AGAGCTTGAA CGTCGCGAGA GGGAGGGCGA GAAAGCCAGG AAAGAAGAGC CTGAGACACG
CCCAAAGATT GTCTGGTTCA AGCCAACGGA TAAGCGAGTG CCATTAATTG CCATTCCCAC
TGAACAAGCT CCCGCCGATT TCATCGACAA CCCGGACGCA TACAGCAACA AGCTCTTCGT
GGCTACAATC AAGCGATGGC CCATGTGAGT TTGAGACAAA CTTGCATGGC ACATGACTGA
TCAGCAATCT GTAGCACCTC ACTTCATCCT TTCGGCACTC TTGTGGAAGA GCTTGGAGCC
ATAGGCAACT CCGAAGTTGA GACAAGTGCC TTGCTGAAGG ATTGTAACTT CCCCACTGAG
GAGTTCTCTG AGATGACTAT GAAATGTTTG CCACCAATGC CGTGGAGGTG AGTATTGTTT
ACCAGCCAGG GATTTGGGAC TGACACTCAA AATGAAGCGT CCCAGAGCGA GAATACGATG
TTCGAACGGA TTTGAGGGAG GAGAGAGTCT TCACAATTGA CCCACCCCAC TCAAAGGATT
TGGACGACGC TCTTTCCTTC AAGGATAATA AAGATGGAAC TTTTACTGTT GGTGTCCACA
TCGCAGATGT ATCCTTCTTT GGTACGTCTA CCTGATGTCT TTTGAAACGA TTCTTATGGA
GTCCTTAGTC AAAGCCAATG CTCAGCTTGA TCGGGAAGCT CGTAAACGTG CCACCAGCGT
TTACCTAGTT CAGCGCGCTG TTCCGATGTT TCCTCCTTTG TTATCCGAAG ATCTCTGCAG
TCTTGTTCCA GATTATGAAC GACTAACGTT CTCGGCTATA TTTACCGTGG ACGAGGAAGG
CAATGTTCTG CAAAAGAAGT TTGCGAAAAC CATTGTAAAG TAAGTCCGGT ACAACGATCT
AAAGAAGTCA GCCAAGATGC TAACCGCCTC TAGATCTTGC GCCAAATTGA CCTATGACGA
TGCTCTTACT GTTGTAAAGG GTGGTGCCTT ACCTCGGTCT AAGACTTCCC GTATACATTT
AGCTACTGAT ATTGAGGGAG ATATCAGGTC CTTGCACGTA AGTCCATTCA GCGACCTGTA
TCTAATACGT ATGTTTATGC TTTGCTTTAG TCCATTGCCA GCAAAATGCG GGCAAGGCGA
ATCGAGAATG GGGCGATGGT TGTTAGCTCA TCAAAAGTGT CCTTCGAGTT TGATGCTCAA
GGTCGTCCAG TCGATTGCCA GACGTATCAA AACGGCGAAG CGTCCGTTAT CGTGGAAGAA
GTGCGTATGC CTTTTAAACT GAGGTGCAAT GCTTATCCTA TAATCTAGTT CATGCTTCTC
ACAAACCAGT CGGTCGCTCG CATTATTGCA AACGCCCTTC CAGAGCAAGC TCTTCTTCGC
CGCCATGAGC CTCCATCGGA ACGCAGGCTG GAATCATTTG TCGCGCGAGC TACCAAGCTT
GGCTTCGATA TGGATCCTAC GAGTGCTGGC ACCTTGCAAA AGTCATTTGA TAAGGTGCTA
GACAACGACT CTGCCCTTTG CATTGATCTT TTGAGGAAAA AGGTTATACA AAGGTGAGTA
CCCGTGTACC ACTTGCGACC GCTGTAGCTC AGCTGAAATC GTTTCGTCAG AGCTCGATAC
TTTTGCGCTG GTATGCTGGA TATTGCAAAA TTCGCTCACT GGGGTCTGAA CACTCCATTA
TATACTCATT TCACCGTGAG TCGTTCTTTT TTTCATAGGC AGGAGTTAAA CTGACGTGTT
TTAGTCTCCC ATCCGTCGTT ATGCCGACGT TCTTGTCCAC CGCATGCTTG ATGCCTGTTT
GACAAGTCGT GAGTATCTTG TTAGTATCTG TATAAGAAAA TGACTGACGT TGCCCGTTTA
GCCAATCCCA ACGAAGTAAA GTTCCTTATG GACAGGGATC AAGTGGCCAA GGCAGCTCAG
CAATGTAATA TGAAGAAGCG TGAGTTGTCA TTCCTCACTT GTCGCTCGCA AAAGATTTCT
CTGATTGTGG ATTAGAGAGC GCCAAGCTGG CCGAAGAGCA ATCAGTTCAT CTCTTCCTTT
GTATTCTCAT TAATGATTTG ACGGAGCACT ACGGCCCTGT TGTCCGTGAA GCTAGGGTGA
CAAACGTTCT CGAGACTGCA TTCGATGTAA TCATTGTAAG TCTTCTTTGC TGATAATCCC
GAACCTGATT CGCTAACTGG CATGCAAGCC CGAATTCGGC GTTGAAAAAA GGGTGCACGT
AGACAAGATG CCCGTGGAAA CAGCTGTCTA CGATGAGCAT CGGGATATCC TATCGTAAGC
GATTCAATCT ATTGTTACAA GTGGTTGCTA AACGAGGTAC AGGTTATACT GGACAACGAA
GGATGTTATC TCACACCTTG CTGATACCAC CGAGGACAAA CGCTTACTGA AGATTAAGTC
CCATGGAGAA CAACGTGCAC TTGGATCCTC TACTTCCCAG GCCACCGATG ACACTGCTTT
GTTCGATGGC AACAGCCCTG ACGTGGTTTC AAAGCAGTAT GCAAAGTCAG CCCACCCTTC
GCCACTCAAA TTTGAGGGGC TCCGCTCTGT AGATGGAGGT CACAAGGTTC AGGATGTCAA
GGAGTTAATG AGTCTGCCAG TCATCATTAC CAGTGACATG ACCAAGAGCC CACCTGTTTT
GGTTGTGTAT GCTTGTGAGT CACTCTTAGA GGAAACTTGG TGTCGCAAAT CATCGCTAAT
GAAACCTTTA GGTAATCCGT ACGCGACGTA AGAAAAGTAT AAGGGGGGAA GTCTACAATA
GTGGACGCGC ATGTTTTCCT TTCTCAATTT TTTGATCCGT TTGTCAAAAG TTTTTCAAAA
GCAGCATATC TCATGGGCGT TTTATTAACA ATCATAAATT GAAGAGAAAA GTCTGGTCTG
GTCGTACAAA GAATTGAAAG ATAATAAGTG GTTTGGTCAG GTCGACTGGC GTTTTAAATG
TATATTCTGT TTGACCAA
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| Protein sequence | MADPVSPTPD HQPQATLAPP PAHPSRPSSA NSQKSNSSRG RGKNANGGSS NMSRTNSNTS
GQSDSGRSDK KRQSGPTTTI SGGVSLGVSG EVPQQSKKGK GKGKNQDKEK ESEKKGASSE
VEKPQKNNSQ KGRRSASGRK PHLTSTNESS RTVSRNSEGE NMPADAGSAQ SAPGPKSIHA
PVSAPRTAIE AAVEAATKKH RSQTGGDALA SLQKMISDLK TLPATSGPAS GSSAGSRSTS
VTRDPPSSSS AKTEPIAIPN APNSGSHKTL KADAPTFTPS FQSFSPVAST SGLSVSPNTT
MPTLTQLHPR SQSQSNGAHH RRNSASSMSS VNFAPPFNPS PIQAFGNPLP PFYQTPLSVH
AEADGESLSP LSFAQHASFQ YQQQQLLAAQ QQQYQYIQLL QAQLAASQLA HQQAQQAAQH
QNQQMGNFIA PRFQALAAQR AASQQQQQAA QLAQAQQVFE LQQAQLLLQQ EEATRTSVRA
AAEAAHPQDQ PVFEEESPEL QPHTVGPTGR PQLAPSFTFG AKSKHGATES VSERGSGRES
LSPAQSSRSP IVVNRSEGIG GAAATGLAGL AARAHKRTGS EMSSVLQQQF AIQQEIEALQ
AKQKALMQQD LTQQGDNPLT QLNTAYAQKQ TPSQTLSRHR RVQSSLPSAS VPVDFEREQG
QPRPMKSVGE MPPPPIPSGH GRRHSVNILN KAAGSGMGFG LADDIPEDVV APSGHRRSSS
RSGLESGSWR LGASSGNAQS SQNQVADLAA AQAQLQSLAQ FRAAAGGGHS KMASFSFPNM
LPNLLAATTL QAPVGQSLWQ QQQAFQMQLQ QTTQGPQRKS LFAPYLPQAS LPPLLQAGKL
VVGVLRVNKK NRSDAYVATD VLDADIYICG SKDRNRALEG DIVAVELLDV DEVWSTKKDK
EEKKRKKEEN ATYDLKPSTV KKLEKKKDDV EVEGQGLTLF DDEEVNDDTK PTYAGHVVAV
VERMPGQLFS GQLGVLRPSS AATKEKQELE RREREGEKAR KEEPETRPKI VWFKPTDKRV
PLIAIPTEQA PADFIDNPDA YSNKLFVATI KRWPITSLHP FGTLVEELGA IGNSEVETSA
LLKDCNFPTE EFSEMTMKCL PPMPWSVPER EYDVRTDLRE ERVFTIDPPH SKDLDDALSF
KDNKDGTFTV GVHIADVSFF VKANAQLDRE ARKRATSVYL VQRAVPMFPP LLSEDLCSLV
PDYERLTFSA IFTVDEEGNV LQKKFAKTIV KSCAKLTYDD ALTVVKGGAL PRSKTSRIHL
ATDIEGDIRS LHSIASKMRA RRIENGAMVV SSSKVSFEFD AQGRPVDCQT YQNGEASVIV
EEFMLLTNQS VARIIANALP EQALLRRHEP PSERRLESFV ARATKLGFDM DPTSAGTLQK
SFDKVLDNDS ALCIDLLRKK VIQRARYFCA GMLDIAKFAH WGLNTPLYTH FTSPIRRYAD
VLVHRMLDAC LTSPNPNEVK FLMDRDQVAK AAQQCNMKKQ SAKLAEEQSV HLFLCILIND
LTEHYGPVVR EARVTNVLET AFDVIIPEFG VEKRVHVDKM PVETAVYDEH RDILSLYWTT
KDVISHLADT TEDKRLLKIK SHGEQRALGS STSQATDDTA LFDGNSPDVV SKQYAKSAHP
SPLKFEGLRS VDGGHKVQDV KELMSLPVII TSDMTKSPPV LVVYACNPYA T
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