| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CNF03990 |
|---|
| Symbol | |
|---|
| ID | 3258485 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cryptococcus neoformans var. neoformans JEC21 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_006691 |
|---|
| Strand | - |
|---|
| Start bp | 1157222 |
|---|
| End bp | 1160051 |
|---|
| Gene Length | 2830 bp |
|---|
| Protein Length | 681 aa |
|---|
| Translation table | |
|---|
| GC content | 47% |
|---|
| IMG OID | 638257517 |
|---|
| Product | vesicle-mediated transport-related protein, putative |
|---|
| Protein accession | XP_571358 |
|---|
| Protein GI | 58268404 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1100] GTPase SAR1 and related small G proteins |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.294872 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GGACATAAGC TACGTCCCGG TATCAAGTTC TCCTCAGCAG ATACCCCTGA TCGATACAAA
AAGCACCTCG CAACATCGCT TAACACTTCT GATCAGCATT GTCGCCCGGA ATGCCCCGAC
GTGACTTGGT TCGCATTGTG CTGGTTGGAG ATGGTCAGTA ACTGCTTTTA CGACAGGTTA
GATAGACAGC TCGGAATAGA GTATGCTGAC AATACCCTTC TGTGTAGATG GCGTCGGAAA
GTCATCTATC ATCACTTCGC TCATCAAAGA AGCATTCGTC ACAAATGTCC GTTCGCCGGC
CTTTCCGCAG TGTTTGCACA AAACTGACTT GCTACAGGTA CCACATGTTG TCCCAGAAGT
GACCATTCCA CCAGAAATAA CACCGGAGAA CTTTACAACC TCTATCGTCG ATACCTCTTG
TATGCTTCTT TCCATTGAAC TCCTTGAAAC ACAGCAGCTA ATTGGAGAAC CATCATAGCG
AACCCAAGGT CGAGGCCACA CCTTCTCAGC TCTATATCCC GAGCCCATGT CATTTGCTTG
GTCTATTCTA TTGCCGATCC AAGCTCCTTC GATCGGGTAG CAGAGTATTG GTTGCCGTTG
TTCAGAAGAG AGGGTATCAA TGTACGTTGC CCAGTTGATT GCTAGGTGAC GCAGGCTGAT
GAATATCCCA GGTCCCTGTC ATTCTTGTTG GCAACAAGAT CGACTTACGT GGTGGAAGGG
TCACCAACCA AGGGTTAGAG GATGAAAGTG CGCCGATCAT GCGCGAATTC AAAGTGCGCC
GCATTTTGCT TGCGAGGAGT TAGAGCTAAC TTCTCTCGTA TTATAGGAAG TGGAGACAGT
TGTGGAGTGT TCCGCTTTAC TGCCTCTCAA CGTTTCGGAA GTCTTTTATT TCGCTCAGAA
GGCTGTTTTA CACCCCACTG CCCCCCTTTA TGATTCCCGA GAACATGTAA ATTACCATAT
TTCTTTGCCG TGATTGGCTG AGCTAATTTT TTAGACCTTG AAACCCAAAT GCCTGGAAGC
GTTAAAGCGA ATATTCACCA TTTCTGATGT AGACAAGGAC GGTCTTCTCA ATGCTCACGA
GCTGAACCAA TTCCAAGTAA GTGACTCTTA ATTCCATATT CAGCAGCTGA TAGTTGCGTA
GCAAAAATGT TTCTCTACAC CTCTTCAATC CCAAGAACTT GATGGCATTC TCGAAATTGT
CCGATCTTAT GATCCTTACG CAGTCCAACC CCTTCCCTCC TCCTCTCCCA ACACCCCTCT
ATCTCGTGAT TCTTCATATG GCCAATTACA TTATTTCAAC AACAATGTCG TCCCGCCTTC
TCCTCCTCAA GAGGGCATAA CGGAGCTCGG TTTCTTGTAC CTGCATACAA TGTTCATTCA
GCAAGGAAGA ATGGAGACTA CATGGACAGT TCTAAGGAAG TTTGGTTATG GGGAGAGTCT
GGATTTGAGA GAGGACTTTT TGGCCCCAAA GTTCGATGTG CCGTCCGATT GCTCGGTAGA
ATTGAGTCCA TTGGGTAACC AGTTCTTGAC GGACATCTTT GAGGCATATG ACAAGGTAAA
TCTAAAAAAA TTGGTAGTAT GAAAGATCCC AGCTGAGGTC AAAATTTAGG ATCAAGATGG
AGCTCTTTCT CAGAATGAGC TTGACGACCT TTTCTCAACA TCTCCTGGGA ATCCATGGCT
TTCACAAGGC TTTCCTGACA CGACCATTAC GGACGATATG GGTAGAGTCA CGCTCCAGGG
ATGGTTAGCG CAATGGAGGT AAGTGTCAAA AATGTGAGAA CTGGCCCATT TGACCATTTG
TAGTATGACA ACGCTTCTCA ACCACCGTAC GACGCTTAAC TACCTCGCCT AGTGAGTAGC
TATGCGGTTT TGACTGTTGG GATGTCAACT GACTCTATTT AGCCTCGGAT ACTCTTCCTC
TCCCGCCACC GATCTTCCTA CTCCCACAGC CCTCCATGTC ACTCGTCCAC GTAAACAGGA
CCGGCGCCAA CGCAAAGTCA CCCGCAATGT CTTTTTGTGC TATGTTTTGG GTGCTACTGG
CTCCGGTAAG ACTAGCTTGT TACGCTCGTT TGTAAACAGA CCGTTCAAAG GTGGTGAGGA
TGGTTTGGGG GGGTATGAGC CAACAACGAA GGTATTGAGT GTCGTGAATT CTGTTGAAAT
GGAGGGCGTG GAGAAGTACT TGGTCGTAAG TGACGCATTT TTCGTACAGA GAGGTTTTGA
GAGCTGATAA TGATCTTTTA GTTGCAAGAA TTTGGGTCAA AGTATGAGAG TGAAATATTA
CGAAATAGTA AACGATTGGA TATGGCAGAT ATCATTATTT ACGTTCACGA TTCAAGTGAT
ACAAACTCCT TCTCCTACAT TTCCAATCTT CGAGTGAGTT TAACCGACTT CAATATTGAA
TTTTGCGATG CTCACCTCGG GATAGCAACA GTATTCTTTA GATCATATCC CTTCCATATT
TGTGGCTACC AAATCCGATC TCGATTTAGC TCAGCAACGG CACGAAGTCC AACCCGATGT
CTACTGCCGC CGTCTGGGCC TCCAGGCACC CATGGCCGTG TCTTCCCGAT TAGGACCTCT
ACACAATCTC TGGGTAGCCA TTACTCGTGT CGCCCTTGAT CCCACATCAT CCCTTCCTCG
CGGGCCGAGA TCGCAAATGT CACCTGCCCA GAGGATACGG GTGGTTGCCC GTTGGGGTTT
GGCAGCGACA ACGATTAGCG CGATCGTGGC TGTGTGGATG AAGTGGCAGG GATATAGCTT
CAAGGGTATA TGGGGCTGGA TGGCCAAATT TGCTGGGTTA AGAACATGAT AGAGCATGAT
CCGGTTACCA
|
|---|
| Protein sequence | MPRRDLVRIV LVGDDGVGKS SIITSLIKEA FVTNVPHVVP EVTIPPEITP ENFTTSIVDT
SSNPRSRPHL LSSISRAHVI CLVYSIADPS SFDRVAEYWL PLFRREGINV PVILVGNKID
LRGGRVTNQG LEDESAPIMR EFKEVETVVE CSALLPLNVS EVFYFAQKAV LHPTAPLYDS
REHTLKPKCL EALKRIFTIS DVDKDGLLNA HELNQFQQKC FSTPLQSQEL DGILEIVRSY
DPYAVQPLPS SSPNTPLSRD SSYGQLHYFN NNVVPPSPPQ EGITELGFLY LHTMFIQQGR
METTWTVLRK FGYGESLDLR EDFLAPKFDV PSDCSVELSP LGNQFLTDIF EAYDKDQDGA
LSQNELDDLF STSPGNPWLS QGFPDTTITD DMGRVTLQGC MTTLLNHRTT LNYLAYLGYS
SSPATDLPTP TALHVTRPRK QDRRQRKVTR NVFLCYVLGA TGSGKTSLLR SFVNRPFKGG
EDGLGGYEPT TKVLSVVNSV EMEGVEKYLV LQEFGSKYES EILRNSKRLD MADIIIYVHD
SSDTNSFSYI SNLRQQYSLD HIPSIFVATK SDLDLAQQRH EVQPDVYCRR LGLQAPMAVS
SRLGPLHNLW VAITRVALDP TSSLPRGPRS QMSPAQRIRV VARWGLAATT ISAIVAVWMK
WQGYSFKGIW GWMAKFAGLR T
|
|---|
| |