| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CNF01810 |
|---|
| Symbol | |
|---|
| ID | 3258492 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cryptococcus neoformans var. neoformans JEC21 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_006691 |
|---|
| Strand | + |
|---|
| Start bp | 523872 |
|---|
| End bp | 527859 |
|---|
| Gene Length | 3988 bp |
|---|
| Protein Length | 1127 aa |
|---|
| Translation table | |
|---|
| GC content | 50% |
|---|
| IMG OID | 638257306 |
|---|
| Product | 5'-3' exoribonuclease, putative |
|---|
| Protein accession | XP_571517 |
|---|
| Protein GI | 58268722 |
|---|
| COG category | [A] RNA processing and modification
[D] Cell cycle control, cell division, chromosome partitioning
[L] Replication, recombination and repair |
|---|
| COG ID | [COG5049] 5'-3' exonuclease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.420898 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | CGACTGAATA CTTTAAGAAT GGTAATTATA CGGATATCCT CCTTAAACCC ACGCTAACTC
GTCCGCAGGG TGTTCCAGCT CTTTTCCGAT GGCTTTCTAA GAAGTACCCC AAGATCGTCG
AGCGGGTGAA AGAGGACACT CCCAAGAAGA TCAGAGGTCC AGATGGCGAA ATTGTCGAGG
AGCCTATAAG ATATGAAAAT CCCAATCCTA ACGGGTTCGA GGTGGATAAT CTTTATCGTA
AGTTGATCGT CGTTAGCATG CCGGACGGAC CACTCATGAA GATTGATCAG TGGATATGAA
CGGTATCGTG CATCCCTGTA CGCACCCTGA AGGCCGACCC GCACCAGAGA CAGAAGAAGA
AATGATGGTG GAAATTTTCA AGTATACTGA AAGGGTAGTC AACATGTGCA GGCCGAGAAA
AGTCTTGATG ATGGCTATCG GTGAGCCTGG TTCTTTTGTA GCTCGATATC TGATGCTGAT
AACCGGTTAG ATGGTGTTGC TCCTCGAGCG AAGATGAATC AACAGCGTTC TCGTCGTTTC
AGAGCCGCTC AAGAAGCCGC AGACAAGGAA GAAGAGAGGA GAGAGGCTAT CAAATTGTTT
GAAGCCATGG GCCACGCCGT TTCAGAAGAG ACTGCCAACC ACAAGAGTTG GGATACCAAC
GCAATCACCC CTGGTACACC GTTCATGGAC CTTCTCTCAA TATCACTAAA GTACTGGGTG
TCCCACAAGC TCACAACCGA TCCTGGCTGG AAAGATCTCA AAATCATCCT CTCTGACTCA
TCCGTCCCTG GTGAGGGTGA GCACAAGATT ATGGACTGGA TTCGTCGTCA GCGAAGCTAC
CCCACTTGGG ATGCCAACAC GTCACATGTC ATCTACGGTT TGGACGCTGA TTTGATTATG
CTTTCGCTTG CTACCCACGA ACCTCATTTC CGTGTTCTTC GAGAAGACGT CTTCGCCCAA
AGTTCTAAGG GACCCCATGC TTGCAAAAAC TGTGGCAAGG TCGGCCATAT TGCTGCCAAT
TGTAAGAGCG ATAAAAAGTT CAAAGACCCC AATGTTGCTG AAGTTGCCAA GACGGAGGAC
CCCAAGCCTT TCATCTTCCT TGATGTGGCT TGCTTACGCG AGTATTTGGC AGTCGAGCTT
GTTGTACCAG GCATGCCCTT CCCGTTTGAC CTCGAATTGG CGATTGATGA TTGGATTTTC
ATGATTTTTT TCGTTGGTAA CGATTTCTTG CCTCATCTGC CGAGCTTGGA AATCCGTGAA
GGTGCCATTG ATGTGCTCCT CAAGATCTGG AGGGCGGAGC TACCGAGGAT GGGTGGTTAC
CTTACCAACC ACGGCAAAGT CAATCTTGAC CGAGCTCAAG TTATCTTGGA AGGGTTGGCC
AAGTCCGAGG ATGAAATCTT CCAGAAGAGG AAGGATGATG AAGAGCGTCA GGAGCATTCC
CAGAAGCGTA GGAGGATTGA AGAGCATAAG AGACAAGATG AGGATAAGGC GCGTGAAGAG
GATCGTAACA CCTTGACTCT AAACGGCACA GAGTACGTTG CTGTTGATAA CCCCGCTGCG
ACCGCCCGTG GCGGTCCTCT TCACCCATCG TTGCCGTCTC GACCGGCATT CGACCTCGTT
CCCAAGGAGG ATGCAGTTAA ACAACCAGAG GATCAGGACC AAAAGGCAAA GAAGGCAATG
GCTGGCTCCA ACTCGGATAT AGTCAAGAAT CGCAAGGCGA TCAGGATGGC AAACATGAGT
GCGGCTCAGG CACTCAAGGC TGAGTTGGAG GGTGGTAATG ACGTGAATGT CGACGACAAA
AAGGCGATTG CCCAAGAAGG AAAGGAAGAG GATGAAGCGG TTGTTACTGT TGAGAGGACG
GAGGACGAGG AAAAGGAGCA GCTGACGAAG GAGGAAGCGA GGGGAACTTT GGAAGAGCAA
GGCGAGAAAG AGGGTGTTGA TGAAGAGGTG GTTCCTCCCG CTATCCAGAC GGACGAGGAT
GAGGGTGAGG CGCCCGTCGG TGATGCCACC GTGGCTGAAA ATGACGAATC TACTACCCCT
GAGGACGACG AAGACCCCAC ACACGTTCCC CGCAAGAGAA AGAGGGGCGA TTCCGATGGT
GATGAGGATA GCAATGAGGA GGATGACGAT GACGACGACG ACGATGCTCC CCCTAATCCC
GAAGCCGACC AGCCTATTCC GAAGAAAAAG CTCAAGGTCA ATGCAGACGG AACGGTCGAC
TATGAAGATG ATGTTAAGCT ATGGGAGCCC GGATATAGAG AAAGATATTA TGAGAAGAAG
TTCGGTGTAA AATTGTCAGA GAGAGAATTC ATTGACAAGT AAGTCCAGTG CCATCATGCT
CAATGTGGCA GCTAACATCG TCAATAGGGT TACCAAGTCC TATATGGAAG GACTCTGCTG
GGTTCTTGAA TATTACTACC AGGGCGTTCC TGCTTGGGAT TGGTTCTATC CTTATCACTA
TGCTCCCTTT GCTCAAGACT TCCGCGACGT TGGGTCTATG GACATCAAGT TCGAAACCAG
CATACCTTTC AAGCCGTTTG CACAGCTTTT AGGTGTTTTC CCGGCCGCTA GGTATGTTAT
CATTGTCTGA TCATCAAGCG GGTGCTAATC TCATCGCAGT CGAATTCATC TGCCTGAACC
TTTACAGACT CTCATGATTG ACGAAGACTC CCCCATCCTC GACTTTTACC CTCCCGACTT
TGAGATCGAT ATGAACGGCA AAAAAATGGC TTGGCAAGGT GTCGCTCTCT TGCCCTTTAT
CGATCAGAAC CGCCTTTTGA CCGCTTTGAA GAGTAAGGAA GAGCTCCTGT CTGATGACGA
GAAGAGAAGG AACAGTTGGG GAGACAATGT TATGTTTATC GCCAACGAGA ACCCGTTGTA
TGATTTATTC TGTGATAAGT TGTATGGTTT AAGAGCGAAA GACGTAAGCA AGGTAAGTGG
CCGGTTTTGT CTTTAAAGTT TGTCAGCTGA TCATTCTTTC AGCCTATACC GATTGACACC
AAAGCTTCGT ACGGCATAAC TGGTTCTGTT CTACCCGATC CCAACTGTGT CCCTGCGTCC
ACATTCGACA CGCCTATTCC CAGTATCTCC GAATGCCCTG ATCTTAACCC CAACGACTCT
ATCTCCGTCC GATATTACTT CCCACGCCAA GCGCATCCTC ATCGATCGAT TCTTCTGAGA
GGATATAAAC CTGAGCCTGC AAGGCTGACG GAAAGCGATA AGGATTGGGT CCGACGTGGT
GGTCAAGGTG GAAGAAGAGG TCACAGGCAC AACGGCGGTG GAAACGGAAA TGTGACAGGT
GGACCGGGTA TGGCAAGAGG CAGGTACGAG AGTGGGCCGC CACGGACCAA TGGCTACCAA
CCGCCTCCGC CTCGGTCGAA CTATGGGGGT AGTTCTGGTT ACGGCTACGG CGCCCCTGCA
CCTCTGCCAT CAAGGCCGCC TGTATCGTCT TACGGAGGTG GAGCCGGTGG ATATGGCTAC
AGTAACCCCT ATGCTGCAGC ACCAAATCCT TATGCCGGAG GTTATGGAGC ACCAGCACCT
TATGGTGAGC TTGATCTCCT TTATATTTAT AGTGAAGAAC AAGGAGCTAA CATCGTCACA
GCTGCAGGAG GCTATGGTCA GCGTCCCTAC GTACCACCGC TGCCCCCACC CAACCCATAT
TCTGCCCCAC CACCAGCTTA TGGTAGACCA CCTGGCGGAG GATATGGTTA TGGTGCTCCT
CCGCCAAGGG GCGGCGGTTA TAATCCTTAT CCCTCCAGGA GGTAGACGCA TAGGGGAGGA
GTAAAAGATG GATAAATGGT GACGGAGGGC CGTTAAGAGG AAGTTAACAT AATAGTAGAA
CATCCTTCAC ATCTGTCAAG TAGGAGTTTT GTTGTTTCTT TCTTTTTCTT CTTCATATCC
TTTGTATATG CTTATTTCCG AGTTGCAACC TTCAGCCTTT GCCTACTACG TTCTCTTGCA
ACTGCGCGTG TTAAAGAGTC ATAATAGC
|
|---|
| Protein sequence | MGVPALFRWL SKKYPKIVER VKEDTPKKIR GPDGEIVEEP IRYENPNPNG FEVDNLYLDM
NGIVHPCTHP EGRPAPETEE EMMVEIFKYT ERVVNMCRPR KVLMMAIDGV APRAKMNQQR
SRRFRAAQEA ADKEEERREA IKLFEAMGHA VSEETANHKS WDTNAITPGT PFMDLLSISL
KYWVSHKLTT DPGWKDLKII LSDSSVPGEG EHKIMDWIRR QRSYPTWDAN TSHVIYGLDA
DLIMLSLATH EPHFRVLRED VFAQSSKGPH ACKNCGKVGH IAANCKSDKK FKDPNVAEVA
KTEDPKPFIF LDVACLREYL AVELVVPGMP FPFDLELAID DWIFMIFFVG NDFLPHLPSL
EIREGAIDVL LKIWRAELPR MGGYLTNHGK VNLDRAQVIL EGLAKSEDEI FQKRKDDEER
QEHSQKRRRI EEHKRQDEDK AREEDRNTLT LNGTEYVAVD NPAATARGGP LHPSLPSRPA
FDLVPKEDAV KQPEDQDQKA KKAMAGSNSD IVKNRKAIRM ANMSAAQALK AELEGGNDVN
VDDKKAIAQE GKEEDEAVVT VERTEDEEKE QLTKEEARGT LEEQGEKEGV DEEVVPPAIQ
TDEDEGEAPV GDATVAENDE STTPEDDEDP THVPRKRKRG DSDGDEDSNE EDDDDDDDDA
PPNPEADQPI PKKKLKVNAD GTVDYEDDVK LWEPGYRERY YEKKFGVKLS EREFIDKVTK
SYMEGLCWVL EYYYQGVPAW DWFYPYHYAP FAQDFRDVGS MDIKFETSIP FKPFAQLLGV
FPAASRIHLP EPLQTLMIDE DSPILDFYPP DFEIDMNGKK MAWQGVALLP FIDQNRLLTA
LKSKEELLSD DEKRRNSWGD NVMFIANENP LYDLFCDKLY GLRAKDPIPI DTKASYGITG
SVLPDPNCVP ASTFDTPIPS ISECPDLNPN DSISVRYYFP RQAHPHRSIL LRGYKPEPAR
LTESDKDWVR RGGQGGRRGH RHNGGGNGNV TGGPGMARGR YESGPPRTNG YQPPPPRSNY
GGSSGYGYGA PAPLPSRPPV SSYGGGAGGY GYSNPYAAAP NPYAGGYGAP APYAAGGYGQ
RPYVPPLPPP NPYSAPPPAY GRPPGGGYGY GAPPPRGGGY NPYPSRR
|
|---|
| |