| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CNF00890 |
|---|
| Symbol | |
|---|
| ID | 3258174 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cryptococcus neoformans var. neoformans JEC21 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_006691 |
|---|
| Strand | + |
|---|
| Start bp | 283217 |
|---|
| End bp | 287285 |
|---|
| Gene Length | 4069 bp |
|---|
| Protein Length | 1080 aa |
|---|
| Translation table | |
|---|
| GC content | 53% |
|---|
| IMG OID | 638257213 |
|---|
| Product | importin beta-4 subunit, putative |
|---|
| Protein accession | XP_571503 |
|---|
| Protein GI | 58268694 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG5215] Karyopherin (importin) beta |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GCTCCATCGT AGAGTTATAA AAGATGGATG TGAGTATGCC ACGTACACCG CTACACATGG
AGCCCATAGC TAACCAACAA ATAGCCCAAT TACATCTCCA CCCTCAGGCA GCTCCTCGAG
GCTTCCATCG CCCCGGACAC CAGCCTTATC AAGGCTGTAA GTGACTTCAA GTGCCACTCG
CCTAACGTCG CTAACAAACA TCGAACAGGC TACTACCCAG CTTAATACCC AGTTCTACAA
GGACCCTAAC TGTATCCCCT CTTTGTATGA GGTCTCATGT ACTAGCGAAA ACCCCGCTGT
GAGTGGCTCG TGGGAGCCAG GGGTTTGAGG ACCAGCTGAT GGGCTACCAC AGATCCGACA
ACTTGCTGCT GTTGAGTTGC GAAAGAGAAT ATCAGCCGGA GATGGTAAAA TGTGGAAGAA
GAACCCTCAG CAATTGAGAG ACCAGATTAA GGAGAGCTTG CTTCAGCGAT TGACCAGTGA
AACTTCGTAT GTCTATTGTT TGGTCAACGT GCCACTGGGA CCCTTTGCTG ATTTGTTACT
TCCCTCCTAG CTCCATTGTT CGACACGCCC AGGCTCAGGC GGTTGCTGCT ATTGCCGATA
TCGAGCTCAC TGTTACCCCT CCTCAATGGC CTACTCTTAT GCCCGGTCTT TACCAAGCCG
CGGGCTCTGC CGACAAGGCT CATCGAGAGA CTGCCATTTA CGTCCTTTTC TCAATCCTCG
ACACCGTCGC CGAATCTTTT GAGTCTCACC TCCAAAGCCT TTTCAAGGTC TTCTCTGTCT
CTCTCGTCGA CCCCGAGTCT GCCGAGGTCC GAGTGACCAC CCTCCGAGCC CTCGCCAAGG
TTGCCGAATA CATCGAGCCC AGCGACAAGC ACGACATCAA GGCCTTCCAG GACCTGATTG
TCCCTATGCT CAAGGTTTTG GAGCAGGCTA TCAAGGACGG TGACGATGAG GGTGTCAAAC
ACGGTTACGA CGCCTTTGAG ACTTTCCTTA TTCTCGAGGC TCCTCTTGTT AGCAAGCACG
TTGCTGAACT CGTGCAGTTT TTCCTCGGTG CTGCCAGCAA CAAGGAAGTT GAGGACGAAA
TGAGGTGTGG TGCCCTCAAC GTTCTTTCTT GGGTTATCCG ATAGTAAGTT GGGTTTTGTG
CGTGGAATGC CTCGTCTAAC AGTTTCACAG CAAGAAGAGC AAGGTCCAGG CTTTGGGTCT
TGCCAAGCCC ATCATTGAGG GTCTTTTGCC CATTGGTTGT GAGGACGACC CCGAGGATGT
CGACGAAGAC TCACCCTCTC GACTCGCTTT CCGAACCCTC GACAACCTCG CCCAGGTTCT
TCCTCCCCAG CAGGTCTTCC CTGTTCTTAC CCAACAACTT CAAGTCTACA TGTCTTCCGG
TGACGCTCGT ATGCGAAAGT CGGCTCTTAT GGCTTTCGGT GTCTCCGTCG AGGGTTGCAG
CGAGTACATC CGACCTCACG TTGACCAGCT CTGGCCCGTG ATCGAGGGCG GTCTCCAGGA
CGGTGAAGTC ATTGTCCGAA AGGCTGCTTG TATCGCTCTT GGGTGTCTTT GCGAGTGGCT
CGCTGAGGAA TGCGCTACCC GACACTCCGT CATCGTCCCC ATCCTCTTCA ACCTCATCGT
TGACCCCGCC ACCCAGAAGA ACGCGTGCAC TTGTCTCGAC TCTTACCTCG AAATCCTCGG
TGACGACATC GTAAACTACC TCACCCTCCT CATGGAGCGA CTTCTTGTCC TCCTTGAGAA
CGGTACCGTC GCCGTCAAGA TCACTGTCAC CGGTGCTATC GGTTCTGCTG CCCACGCCGC
CAAAGAGAAG TTCATCCCTT ACTTCGGTCA GACCATCCAG CGACTCGTTC CTTTCCTCGA
GCTCAACGAG AACGACGAGC AGAACGACCT TCGAGGTGTC GCCACCGACA CTATCGGTAC
TATCGCTGAC GCCGTTGGTG CTGACGTCTT CCGTCCGTAC TTCCAACCCC TCATGAAGGC
CGCCTTCGAG GCCCTTACCA TGGACAACTC TCGTCTCAGG GAATCTTCCT TCATCTTTTT
CGGCATCATG GCCCAGGTCT TCACTGGCGA GTTCGCTCAG TACCTTCCCC AGTGTGTTCC
TGCTCTTGTC GCAAGCTGCC AGCAGAGTGA AGTTTCCGAA GAGCTTGACG AGGAGGGCAA
CTCTAACCCC GCCCAACTTG CTGAGGCTTT CAGCATGGCC GCTGGTTCCA GCAAGAATGC
TGGCGAGCTT CTTGACGATG AGGAGGACGA CACTGACCTT GCCGCTTTGG ACGACATGTT
CTCCAAGGTG AACAGCGCTG TCGCCATCGA GAAAGAGGTC GCCGCCGACA CCATTGGAGA
GCTCTTTGCT GCTACCAAGT CTGCTTTCAT GCCCTACGTT GAGGAGACCG TCAAGGTTCT
CATTGACTTG CTCGATCACT ACTACGAGGG TATCAGGAAG TCTGCTGTCG GTGCCTTGTT
CCAGTACATC AAGACCATGT ACGAGCTTTC CGAGGCTCCC GAATGGCAGC CCGGAGCCAA
GATTGTGAGT AGACACTGTA TCTTCTGTGT GCCTTGTTGA TCCGTTCACA GGCCATCCCT
CTCCATGAGC ACGTCAAGAG CATTGTCAAC TTGGTTCTTC CTCCTATTTT CGAGACCTGG
AAGACTGAGG ATGACCAGTA AGTTTGTGTT TCTACACTTG ATTTTTTCTC CTTTTTTCGA
CGAATGAGGA CAACTTTAAC TCAGCTCACT CCGAGCCAAT GTGCCATGAG GCTATCTATA
TAATTTATCT GATCCACTAT CTTCTCTTTC AAACTCAAAT TATTTGGCAT AAGGATCGAG
GCTAACGCTT TAACTCAGGT CTGTTGTCAT CTTCATGTGC TCTGAGCTGG CCGACACTAT
GAACAAATGC GGTCCGGCTG TCATCGAGGG CTGTAAGTTT ACTGCCCTGT AGCTATCGAA
AGCAGCGACT GACGCTCTAC AGACCTCGAC GAGGTTGCCA CTTTCGCCAT TGAAATCCTC
GAGAAGAAGT CTCTCTGTCA ACAGGACCCC GATGGTGACG ACGAGGGAGC TGCCGAGGCC
GACTCCTCCG AATACGAGGC CGCTCTCGTA TCCAACGCTG CCGACGTCTT CGGTGCCATG
GCTACCGTCC TTGGTCCCGA CTTCCAACAG GCTTTCGGCC AGGTCTTGCC CTTGATTGCC
AAGTACACTG AGAGCAAGAG GACAAACACT GAGAGGTCTA TGGCCATCGG CAGCTTGGGT
GAGATCATCG TTGGTTTGAA GAGCGGTGTC ACCCAATTCA CCGAGCCTCT CTTTCAAGTC
ATCTCCCGAG GTATTGTCGA CGAGGACCCC GACGTTCGAT CCAACGCCGC CTTTGCCTCA
GGTGTCCTCA TCGAGAACTC TGACGCCGAC CTCTCTTCCC ACTACCCTGC TCTCCTCCAT
GCCCTCCACC CTCTCTTCAC CCCTCCTGAG CACGCCCCTC CTGCTCTCTA CAACGCTCGT
GACAACGCTG CCGGTTCCGT TGCTCGTATG ATCACCAAGA ACGCCGCTGC TCTCCCTCTT
GCCGATGTTG TTGCCGTTAT CGTCTCTGTC CTTCCTCTCA GGTTTGACCC TCTCGAGAAC
CGTGCGGTCT ACAAGGCTCT CTTCCAACTG TTCCGAACTC AGCCCGATCT CGTCATGGCT
CATATTGACC ATTTGCTCCA GGCCTTTGCC TATGTCCTTC TTGACCCTAG CCACGCCGAT
GACACTACAG ATGAGACCAA GGCGGAGCTC AAGGCATTGG TTGAGCACTT GAAGAGCCAA
GTGCCCGACA AGGTTGCTGC TGCTGGCTTT GCTTAAAGCG CGCCAAAGGT GTTGTTGTAG
CGGCTTTAGA GCAAGTCTAA AAATGTAGAT ATATATAATC GAGGGCGGAA AGAAGAGAAG
AAAGGAGGAA GGCATATTTT ACGACATCAT GAATAACCCC CCAAAACCAT CCTGCCCAAC
CCAATCCCAT CATAAACCGC ATTCTTTCAT CTTTTTTCTT CTTTTGTTAA ACTGTTTGAA
ATATACCTCT AGTGGTCTAC GCGATTCCCC CATCTTTGTT CATAGAGAG
|
|---|
| Protein sequence | MDPNYISTLR QLLEASIAPD TSLIKAATTQ LNTQFYKDPN CIPSLYEVSC TSENPAIRQL
AAVELRKRIS AGDGKMWKKN PQQLRDQIKE SLLQRLTSET SSIVRHAQAQ AVAAIADIEL
TVTPPQWPTL MPGLYQAAGS ADKAHRETAI YVLFSILDTV AESFESHLQS LFKVFSVSLV
DPESAEVRVT TLRALAKVAE YIEPSDKHDI KAFQDLIVPM LKVLEQAIKD GDDEGVKHGY
DAFETFLILE APLVSKHVAE LVQFFLGAAS NKEVEDEMRC GALNVLSWVI RYKKSKVQAL
GLAKPIIEGL LPIGCEDDPE DVDEDSPSRL AFRTLDNLAQ VLPPQQVFPV LTQQLQVYMS
SGDARMRKSA LMAFGVSVEG CSEYIRPHVD QLWPVIEGGL QDGEVIVRKA ACIALGCLCE
WLAEECATRH SVIVPILFNL IVDPATQKNA CTCLDSYLEI LGDDIVNYLT LLMERLLVLL
ENGTVAVKIT VTGAIGSAAH AAKEKFIPYF GQTIQRLVPF LELNENDEQN DLRGVATDTI
GTIADAVGAD VFRPYFQPLM KAAFEALTMD NSRLRESSFI FFGIMAQVFT GEFAQYLPQC
VPALVASCQQ SEVSEELDEE GNSNPAQLAE AFSMAAGSSK NAGELLDDEE DDTDLAALDD
MFSKVNSAVA IEKEVAADTI GELFAATKSA FMPYVEETVK VLIDLLDHYY EGIRKSAVGA
LFQYIKTMYE LSEAPEWQPG AKIAIPLHEH VKSIVNLVLP PIFETWKTED DQSVVIFMCS
ELADTMNKCG PAVIEGYLDE VATFAIEILE KKSLCQQDPD GDDEGAAEAD SSEYEAALVS
NAADVFGAMA TVLGPDFQQA FGQVLPLIAK YTESKRTNTE RSMAIGSLGE IIVGLKSGVT
QFTEPLFQVI SRGIVDEDPD VRSNAAFASG VLIENSDADL SSHYPALLHA LHPLFTPPEH
APPALYNARD NAAGSVARMI TKNAAALPLA DVVAVIVSVL PLRFDPLENR AVYKALFQLF
RTQPDLVMAH IDHLLQAFAY VLLDPSHADD TTDETKAELK ALVEHLKSQV PDKVAAAGFA
|
|---|
| |