Gene CNE04710 details

Gene Information

• Locus tag: CNE04710
• ID: 3257590
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Cryptococcus neoformans var. neoformans JEC21
• Kingdom: Eukaryota
• Replicon accession: NC_006687
• Strand: +
• Start bp: 1316110
• End bp: 1322495
• Gene Length: 6386 bp
• Protein Length: 1848 aa
• GC content: 48%
• IMG OID: 638257055
• Product: helicase, putative
• Protein accession: XP_570982
• Protein GI: 58267652
• COG category: [K] Transcription; [L] Replication, recombination and repair
• COG ID: [COG0553] Superfamily II DNA/RNA helicases, SNF2 family

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

CCCCCCACCA CGCCGCAATT TTCATCAGCC TCCGCTCGAT AGTGGATTAC GTAATATTAT 
AACAGGTGGA GGTCTTCCGC GACAAACCAC TCGTCCTTGT CAACCACTGG CATGTCCTTT 
AGGTAAACTA TTTGAACTTG CGAAGAAAGA CGAGCTACTG ACATGTATGC AGACAAGATA 
AACTCATCCT TCTTCTCGAC AGTGGATCTT CACAGCAAAT AAGGCAAACT GCAGCGAAGC 
AGATTGCTCG TATAGCTCGT ACTTCTTTCG ATGCCGCCAC ATCAAAACCT GATGCGAAAC 
CTCACGTCGA TGGTGATAGT TCTATAACAG TCCATAGCAG CGGTGCGGAG CAAGATGCGT 
GGAACGATAC TCTAGAGACT ATCAGTAAAA TACTCGCGCT TTTCAAGTCA AAGTCATCAG 
AAACACGACA TGCTGCGGCT CATGCCATTG GGTTACTCGC TAAAAGCATG CCCGAGTACA 
TCGAGATAGC TTCGATGAGC CGGGCATTTC TTACTTCACA ACCGACAGAT CTGCCATCTA 
CCCTCAAGCA TGGCCAGATG CTATTGGCGT CCGCGGGTAG AGAGTACGCT GCTAAACCGT 
TACCGGGAGA CAAAGCCAAA CGCCGGAAAG CTATGATGGC ATCTGTTGGC CTAGGTGATG 
CTGTCGGATG GGGTGAAGAT ACCGATAAGG TACTTGATGA TGACGACGAT GATATGGAGG 
ATGTGAGGAA GACTGCGCCC CCGAGTAGAG AGCCCTCGGT GCCCCCACCA GATGTTTTCG 
AGGGGCTGAG TGCGAGGCAA ATAACGATGC TTAAGCGGAA GAAGGGCACC AACATTATGG 
AGGAAGCCAA CAAGTATGTT CGAATCGGTG TGTTAAGTTG ATCTTACCTG GTCTAATTGA 
ATTATGTAGG ATGCGTCGGC TCAACGAAAA AGCTGTCGGC AATGGAAGTT CCTCAGCGGC 
GCCTTCTCGT GCCAATTCTC CTCCCCTTCC CGAATCATCA GCGACACCTG ATTTGAAGGC 
CGAGGTCATC ACGATCGATC CCGGAGCAAA AGTCAGAGCA GCTGAAGCTG GCGGACAAAT 
AGATCCTGCT CTCGATACCG AGGGCAACCC ATTGGCATCT TCCAAAACTC TTACAATCAC 
TTCTGGACAA TCCCCATGGA CTACCGTTCT TCTTGAAGTC ATTCCTGACC TACACGATAC 
GACTTGGCAG ACTCGTCATG GCTCTGCATT GGTCATTATG GAGATACTCC GTTCTCTTGG 
TACATCTTAC GCTAATGCCC ATCCAGAGCT CTACGTCGCC TTATCCCGTC AGCTACTCTC 
GCTCCTTGTT TTGGACCGTT TCGGTGACTT TGTGGGCGAC ACTGTCATTG CTCCAGTACG 
TGAAACTGCA GCTCAGACAC TAGGTGTCGT GCTCAAGTAC ATTTCAACCC CCGGTGTCAA 
GGAAATCCAC CAGACTCTTA TGGGCATGGT GAGACAACCT TGGGCCAAGA GAGGGAAGGA 
GGCCGAGAAC TCACAAAAGG CCGATAAATT CGCTTGGGAG GTCAGACATG CCGGATTGTT 
AGGCTTGAAG TATGAAGTGG CTGTGAGAGG AGACTTGTTG TCGACTAAAA TGGAAGAGGA 
TGTCAAGCCC GACGTAGAGA TGGGGGATTT CAACCTTTTG GATGATGTAG TCAACGCGGC 
TATCTTGGCG TAAGTACCGC TTGGCAGTGA GACAAGGAGC CATAACTCAT TAGACATAGA 
TTGGGAGACG CCGATGATGA TGTGCGAACG GTTGCTGCTT CCGCCTTAAC ACCCATTGCA 
GAGACCCTTG CCAGTCAGTT GCCTACTGAA GAGTTGGCCA AGCTTTTGCA GTCGCTATGG 
GATTGTCTAG CTGAGGGTGG GGATGAGCTT GGTAGCAGTA CAGGTGCAGT CATGGACCTT 
CTGGGTGCCC TTATCTCCTA CTCTGAGGTA ATCGCCCTCC TTTCTGCCGA CAACAACAAC 
CTAGTCTCTC GTGTCTACGC CTTCCTTCGT CATCCTATCG CTTCCGTGCG TTTATCGGTT 
GCCAACATTC TTCTTGCTTT TTCACGCCTT TCTTCAATAC CGCGACGGTG GTCTTCTGAC 
GGTTACTTCT CATTTTTGTT CCAGAATCTT GTTTTGGAAG AACGCCAGGA CGTGAGAGAT 
GTTTCTTTCC AAGCTTTCGA GACGTCTCTC GTCGAGGCTT CCGACATGCC TGAGGGCGTT 
GGTGTTGTCC TCGGAGGCGA TGTTGAAGAC TGGTACTCCA TCATCATGAC TCCCATTGGC 
GTTGCTCTGG ATGCCAATCT CTTCAGAAGG CCGACAAAAG CAACTGGGCA GACACACAAT 
GTGGACAAGG CGATGATGGC GGGAGATATG TCACTTATCT CGATGGATAC GGCATTGCAG 
ACGAGAATAG CTGGCGCGAA AGCTTTAGCG CTGTTGAGAC GATACAAGTT GACAGAAGTA 
AGTCTCGCTG GAGTGAGCGC CAGATTTAAA CTGACACTGC TCTCAAGATC AACGACATAA 
AGCTCTTGCG GCAATTTCTT GGTTCAGCAA GTTCCCATCA GACATTCTTG GCTTCAGTTA 
TCATTCAGGA ATGGGCTCTT GATACTGAAT CTCGAGTATC CGATCCATTC TCGTTTAGTC 
TCGGCACTTC CAACCCGGAC GTCGAATCCT TATCAACGCT TCTCATCGAC CGTATCGGAA 
GTCCTGCCCC TTCGACGTAC CACGAGATGG CAATGGTCCT GCAAAGAATC TACTCCGAAT 
GCAGCGCTCT GCTCACTGCG TTCAGTGTAG AAGGCAAGCT TTCTAAGGAC AAGGTTCCCT 
CCTTGCCCAA GCGTATTGAT CCTCTCAGCA ACACTCCAGA TGTCTTCTCC ATTGAGTCTG 
CTCACCACGC TGTCACTACC CAGTTCGACA TCTTAGCAGG CAAGCTATCC AAGAACGCCA 
TTAAAAACGC ATTGCCCTCT CTTCAAGATA GGAGAAATAA GGTGATGGGT TCTGTCGGAT 
ACTTCTCCAT CATGAAGGAG AAGTACGACG TACAAGTCAT GGCAGGTATT GCAGGTGCGT 
TGGTGGCACT TAAGATAATG CCACCCAAAT TTGGACCAGT TATTAAGAAC TTGATGGACG 
GCGTGAAGAA GGAAGAAAAT GAGATCCTTC AGAAGAGGGA TGCCTTCTGG GTAGCCGCTT 
TCATCCAATA TACAACATCA CCTTTCTTTA CTGGTCGAAT TAATCCCTCC GACAAGGTTG 
TCAAAAATCT CTTTACCTTC CTTTGCCTCG ACACTTCTGT CACTCCGGTG TTCTCACCGA 
CCGCTCAAGG CGCCACGGAA GGCATTATCA CACTTCTCGA GGAGAGAACA GCGGCAGCAG 
CTGCTAATGC TAGGAAGAAG GACATCGTGG AAGAGAGTGA GGAGCAGATG GCGAGTCGCA 
TGACCAGAAG GGGTGCTTTG GAGACATTTA AGGCCATGGC GAAGAGGTTT GGCTCGAACT 
TGTTTGAGAA GGTCCCTAAA TTTTGGGAGG GTGTTAGCGG TGCGCTATTG GCCAACTTCG 
CCGATGGTGA GCCTTCGTTC CTCTGACAGT TTATCGGTCG CTGATTATAT CGTAGGGGTG 
AACATGGAAC AAGTTGACCA AAATTTGACA GCCAACGTTC AAGCCGGTCA GGATTTGATT 
GACGCTCTGA CTTCTCTCCG TTTAATCGCT CCTGAGCTTG ACCCTGTTCT TTACTACAAA 
CTGCACGGTC TTTTCTCACC CATAATCACT GCCCTACAGA GCTCGTTTTC AGTTGTCCGG 
AATGCGGCGG CTCAGTGCCT CGCTGCTATG TGTGACGTGA TGACAGACGA GGGCATGAAG 
AGAGTTGTAG ATGACGTGGT ACCCCTGGTG GGTGATGCCA AAAAGGCCTA TTCTCGACAG 
GGTGCTGTAG AAGCCATTCA CCGTAAGCTA TTCTTATTAT GTCGATACGC TTGTAGCGGC 
TAATGTATCA CCTATGTTTA GGTATTATCA AGGTTCTTGA TCTCAAAGCT CTTCCTTATG 
TCCTTTTCCT CATCGTCCCC ATCCTGGGGC GTATGTCCGA TCCCGATGAG CATGTCCGTC 
TGCTATCAAC CAGCACTTTT GCCTCGCTCG TCAAGATGGT TCCTTTAGAA GCTGGTATTC 
CTGATCCTCC TGGCTTTTCT GCGGACCTTC TAGCGAAGAG AGATGAGGAG CGCAAGTTCC 
TCATGCAGTT GCTAGATGGC AGCAAGGCTG AGCAGTACCA GATCCCGGTG GAGATCAAGG 
CTGAATTACG ACAATATCAA AAAGATGGTG TCAGCTGGTT GGCGTTCTTG GCAAAGTATC 
AACTGCATGG CATTCTCTGT GACGGCGAGT CCCCCAATAC TATTAAAATC CTTATCAAAG 
CTAATGAAAG TTGTTTAGAT ATGGGTCTCG GTAAGAGTTT GCAGAGTATT TGTATAATTG 
CGAGCAAGCA CCACGAGCGT GCCGAGCGCC ACAAAGCTAC CCAATCAATT GATTCGGCTC 
ATCTTCCGTC TCTTATTGTC TGTCCTCCCA CGCTCACTGG TCACTGGTAT CACGAAATCC 
TCAAATTCGC TCCTCACCTC CGCGCGGTGC AATATGTTGG TTCCACTTTT GAACGTGCTA 
CCCTTCGTCG ATCCCTTTCT TCTTATGATG TTGTAATTTC CTCGTATGAG TGCGTTCGTT 
CTGACATCTC TGAACTCTCC AAATTTAGCT TCCTCTACTG CGTTTTGGAT GAAGGGCATA 
TCATCAAAAA CACCAAGACC AAGCTAGCTG TGGCTGTGAA GCAAATCAAA GCTCAGCACA 
GATTATTGCT TTCTGGTACT CCTATTCAAA ACAATGTGCT TGAGCTTTGG AGTCTGTTTG 
ATTTCTTGAT GCCGGGATTC CTCGGTAATG AGAGAACATT TAATGAGAAA TTCTCGAAGC 
CGATCTTGGC TGACCGAGAG GGTAAGGCCA CTCCGAAAGA GCGTGAAGCA GGTGAGCGTT 
TCGTTGCAAA GTTTTGACTT GTATCCTGAT CAGTCCTCAA TAGCCGCAAA TGCCCTTGAG 
GCTCTGCATA AACAGGTTCT TCCCTTCCTT CTTCGTCGAC TCAAAGAAGA TGTCTTGAAC 
GACCTTCCGC CAAAGATCAT CCAAGATTAC TATTGCGAGC TTTCTCCCGT ACAACAACAG 
CTTTACGAAG AGTTCTCTCG CTCCAAAGCG GCTGAAGAAG CCGGTATGGA GATTGAGACT 
TCGGCATCGA AAGAAGGTCA GGGCCACGTT TTCCAGAGTT TGCAGTATCT CAGAAAGTTG 
TGTAACCATC CTGCATTGGT ACTGGACGGC GAACCGCAAA GATTTAAGGA AATACAGAAG 
AAGATTGGTG GCGGGCCAGA ATTACACGAT TTATCACATG CACCAAAGAT GGAGGCTTTG 
AAGTGAGTCA GTTTTTGACT GAAGGTGCTT TTGATTGAAT ACTGATGGAT CTTGCAGGCA 
ACTGTTGCAA GACTGTGGTA TCGGTCTTCC GGTCGACAAG CTTGCTGACG ATGTCACCAC 
TCATCGAGTC CTTATCTTCT GTCAACTTCG TCCCATGCTC GACATCATTG AGAAAGATCT 
TTTTGGTACC CATATGCCCA CAGTATCTTA TATGCGTCTT GATGGCTCCA CTGATCCTCG 
GAAGCGACAT GCCATCGTTC AGACGTTCAA TGCGGACCCT AGAATTGATG TTTTGCTGTT 
GACGACGAGT GTTGGAGGTT TGGGTCTGAA CTTGACGGGT GCCGACACCG TCATCTTTGT 
GGACCACGAT TGGAACCCGA TGAAGGATTT GCAGGCGATG GATAGGGCGC ATAGGCTGGG 
TCAGAGGAAG GTTGTGAATG TGTATAGGTT AATTACTCGT GGAACATTGG AAGAGAAGAT 
TATGGGGTAC GTGTTGAAGC CCTTAGTATC AAATCGCAAG AGCTGACAGA ATGCCATCAG 
TCTACAACGG TTCAAGCTGA ACATTGCTTC ATCCGTCGTA ACTCAACAAA ACGCCGGTCT 
CGGATCTATG AACACAGGAG AAGTGCTCGA CTTGTTCAAA GTCAGTGCCG AAGGCGAACC 
AGTAAAGACG AAATCTGCTG GGACGGGCGC GGTGTCTATG AGCAAAATGT TGGAAGAGTA 
CGTGCATACA TCTATTTATT AAACGCAAGT GTCGTCAAAC TGATCATGTG TCCCGTTATT 
TGTTTATCTA GGTTGGATGA GCTTCCGCCA GAGGATGAGT ACGCAGAGTT GTCATTGTCA 
AATTTCCTCA GCAAAGTATA AGATGTGAGA ATAGGACATG ACATGCGTTT TCTTTACATT 
CGACATTGAT GTGACATTAG TACAAGTATA AGCATAGGTA TGGATGTGGA GCATTAGATG 
TTTATATGCA TTTTTCAATC ATTGCG 

 

Protein sequence

MSFRQDKLIL LLDSGSSQQI RQTAAKQIAR IARTSFDAAT SKPDAKPHVD GDSSITVHSS 
GAEQDAWNDT LETISKILAL FKSKSSETRH AAAHAIGLLA KSMPEYIEIA SMSRAFLTSQ 
PTDLPSTLKH GQMLLASAGR EYAAKPLPGD KAKRRKAMMA SVGLGDAVGW GEDTDKVLDD 
DDDDMEDVRK TAPPSREPSV PPPDVFEGLS ARQITMLKRK KGTNIMEEAN KMRRLNEKAV 
GNGSSSAAPS RANSPPLPES SATPDLKAEV ITIDPGAKVR AAEAGGQIDP ALDTEGNPLA 
SSKTLTITSG QSPWTTVLLE VIPDLHDTTW QTRHGSALVI MEILRSLGTS YANAHPELYV 
ALSRQLLSLL VLDRFGDFVG DTVIAPVRET AAQTLGVVLK YISTPGVKEI HQTLMGMVRQ 
PWAKRGKEAE NSQKADKFAW EVRHAGLLGL KYEVAVRGDL LSTKMEEDVK PDVEMGDFNL 
LDDVVNAAIL ALGDADDDVR TVAASALTPI AETLASQLPT EELAKLLQSL WDCLAEGGDE 
LGSSTGAVMD LLGALISYSE VIALLSADNN NLVSRVYAFL RHPIASVRLS VANILLAFSR 
LSSIPRRWSS DGYFSFLFQN LVLEERQDVR DVSFQAFETS LVEASDMPEG VGVVLGGDVE 
DWYSIIMTPI GVALDANLFR RPTKATGQTH NVDKAMMAGD MSLISMDTAL QTRIAGAKAL 
ALLRRYKLTE INDIKLLRQF LGSASSHQTF LASVIIQEWA LDTESRVSDP FSFSLGTSNP 
DVESLSTLLI DRIGSPAPST YHEMAMVLQR IYSECSALLT AFSVEGKLSK DKVPSLPKRI 
DPLSNTPDVF SIESAHHAVT TQFDILAGKL SKNAIKNALP SLQDRRNKVM GSVGYFSIMK 
EKYDVQVMAG IAGALVALKI MPPKFGPVIK NLMDGVKKEE NEILQKRDAF WVAAFIQYTT 
SPFFTGRINP SDKVVKNLFT FLCLDTSVTP VFSPTAQGAT EGIITLLEER TAAAAANARK 
KDIVEESEEQ MASRMTRRGA LETFKAMAKR FGSNLFEKVP KFWEGVSGAL LANFADGVNM 
EQVDQNLTAN VQAGQDLIDA LTSLRLIAPE LDPVLYYKLH GLFSPIITAL QSSFSVVRNA 
AAQCLAAMCD VMTDEGMKRV VDDVVPLVGD AKKAYSRQGA VEAIHRIIKV LDLKALPYVL 
FLIVPILGRM SDPDEHVRLL STSTFASLVK MVPLEAGIPD PPGFSADLLA KRDEERKFLM 
QLLDGSKAEQ YQIPVEIKAE LRQYQKDGVS WLAFLAKYQL HGILCDDMGL GKSLQSICII 
ASKHHERAER HKATQSIDSA HLPSLIVCPP TLTGHWYHEI LKFAPHLRAV QYVGSTFERA 
TLRRSLSSYD VVISSYECVR SDISELSKFS FLYCVLDEGH IIKNTKTKLA VAVKQIKAQH 
RLLLSGTPIQ NNVLELWSLF DFLMPGFLGN ERTFNEKFSK PILADREGKA TPKEREAAAN 
ALEALHKQVL PFLLRRLKED VLNDLPPKII QDYYCELSPV QQQLYEEFSR SKAAEEAGME 
IETSASKEGQ GHVFQSLQYL RKLCNHPALV LDGEPQRFKE IQKKIGGGPE LHDLSHAPKM 
EALKQLLQDC GIGLPVDKLA DDVTTHRVLI FCQLRPMLDI IEKDLFGTHM PTVSYMRLDG 
STDPRKRHAI VQTFNADPRI DVLLLTTSVG GLGLNLTGAD TVIFVDHDWN PMKDLQAMDR 
AHRLGQRKVV NVYRLITRGT LEEKIMGLQR FKLNIASSVV TQQNAGLGSM NTGEVLDLFK 
VSAEGEPVKT KSAGTGAVSM SKMLEELDEL PPEDEYAELS LSNFLSKV