| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CNC02590 |
|---|
| Symbol | |
|---|
| ID | 3256355 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cryptococcus neoformans var. neoformans JEC21 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_006685 |
|---|
| Strand | - |
|---|
| Start bp | 739743 |
|---|
| End bp | 741668 |
|---|
| Gene Length | 1926 bp |
|---|
| Protein Length | 478 aa |
|---|
| Translation table | |
|---|
| GC content | 44% |
|---|
| IMG OID | 638255479 |
|---|
| Product | polygalacturonase, putative |
|---|
| Protein accession | XP_569552 |
|---|
| Protein GI | 58264792 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG5434] Endopolygalacturonase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGCTTCC TCTGCCTCTT CGCCTGCGTT CTATCTAGCG CGGTCGTGCA GGGATCCCTC
TTCGTGCTCA GTGAATCTCA AGATCAAAAA ATTATTCCTG AAATCCTTGA AAAAGATAAC
AGCATTTGGC CCTATCACCA TGAGGTATTT GAATTCCACC CAGAGCACAA AGACCTCTCC
ACAGGGCTTG TCCGACCCCT TTGTGTCTTA CATACTTTGG GAGAAGGAGC AGACGACTCA
TACAACTTTG AGAAAGCTGT CCATCAGTGT GGTCGCGGCG GCATTGTGAG ATTACCAGAT
GCCAACTAGT ATGTTCAAGT CTTGTTCAAC TTTCTAGTCA TATATCCTAA TCTAACTGGA
TTGTAGCACA ATCAGTCGTC CCCTTGACAT ATATCTTTCC AACTCCGTTC TTGATCTTCA
TGGTTGGCTA TCTTTTTCCG CGAACGTCTC TTCATGGATT GAAAATCGGA TGCCTCTTGG
CTTCCAAAAT CAATCACTTG CATTTGTGGT GAGGGGTAAT GATTACATTC TCGAGGGGAA
TGATAAAGGA GGGATAAATG GAAATGGACA AGCTTGGTAT GATTACGCAA AGGACTACGG
AAATAAGTTC GGGCGGTGAG TCGGTTTCTC AGGCTAGCCT GTATTGTCCT TGTCATCGTT
CTGAACAAGA CTTCATTTCA ACAGGCCCAT GTCATTGGCC ATCAAAAACA GCAAAAACGT
CATTATAAAA AATTTCAGCA TTGTCCAGCC ACAATTTTGG GCTTCCCTCA TATGGGGTTC
GGAAAATGTG TACATAAAAG ATTTCTACGT TAATGCTACT AGCTTCAACC CGGAATCTTC
CAGTGATCAG AAGAACTGGC TTCAGAACAC TGGTGAGTAA ACATAGGATG ATGGGCTTAA
GGAGTGTAGG TGCTGATAAA ATGATAAATT TACAGATGGA AGTGACACAT ACCAGAGTCA
CAATGTCACT TACGGTGCGT TTTCGTTCAA CTGGTAATAA AAATTACTTT CCTGATCCGA
ATGGATATAG AGAATATGAT TTACCAGGGT GGCGACGATT GTGTAGCATT GAAGCCAAAT
AGTACATCCA TCACACTTCG TAATGTGACT TGTTACGGAG GGACGGGTAT TGCCTTTGGA
TCGATTGCTC AGTACGCGGG CGTGGTAAGT GATGTCGGAC CTTAGGATCG CCTTCATAGC
TGACTGTCGA GATATTGATC TCATATAGAA AGATGTGATT GAAGATGTGT TTATGGAGGA
TATTCGACTG TATCCATCTA ATCAGTGCCC AGCCTATCAA GGTGTCTATT TCAAATCTTG
GTTAGGGTAA GTGTCCGACT GACATCAACT AGCCTTGCCC AGAACTGACC ACATTGCAGA
TACTCTATCG GACAGCCACC AAACGGTGGG GGTGGTGGGT ATGGATATTG TCGTAACGTG
ACAGTAAAGG ATGTCTACAT GGAGGATATA TGGCATCCTC TCGTCGTCCA ATCTGAGTGG
GTTTCGCTCT ACTTTACTAA CTTTCTGTAA TAAGGCGGTG ATATATCGTG CTGATGAATG
ATACTCCACA GCTTAACCTA TCTCACTTTA GACCGTGAAA AATTTACAGA TTCCGGTCTC
TTCGAGTAGG TTCTTTTATA AGATTGACAC GTTTCTGGAT CTGATTGATT GTAAAGGTGG
TATGATATCC ACCTGAAAAA TTTCACAGGA AAAGCTTTGG GTAACAGGAT CGCCTGGATG
TCCTGTTCCA AGTTGACACC ATGTCATGAT TGGACATTTG AGGGCATGGA TATCATGCCA
GGTAAACAAG ATCACCCCGA GATCCATTAT ACTTGTAATA ATTTTGTGCT GGGGGGGAAT
GATGGACTTA ATCAGTGCCA TCCCAGCAAC TCAAAGCTTG AAACTGAGAA TGGTGGCACA
CTCTGA
|
|---|
| Protein sequence | MRFLCLFACV LSSAVVQGSL FVLSESQDQK IIPEILEKDN SIWPYHHEVF EFHPEHKDLS
TGLVRPLCVL HTLGEGADDS YNFEKAVHQC GRGGIVRLPD ANYTISRPLD IYLSNSVLDL
HGWLSFSANV SSWIENRMPL GFQNQSLAFV VRGNDYILEG NDKGGINGNG QAWYDYAKDY
GNKFGRPMSL AIKNSKNVII KNFSIVQPQF WASLIWGSEN VYIKDFYVNA TSFNPESSSD
QKNWLQNTDG SDTYQSHNVT YENMIYQGGD DCVALKPNST SITLRNVTCY GGTGIAFGSI
AQYAGVKDVI EDVFMEDIRL YPSNQCPAYQ GVYFKSWLGY SIGQPPNGGG GGYGYCRNVT
VKDVYMEDIW HPLVVQSDLT YLTLDREKFT DSGLFEWYDI HLKNFTGKAL GNRIAWMSCS
KLTPCHDWTF EGMDIMPGKQ DHPEIHYTCN NFVLGGNDGL NQCHPSNSKL ETENGGTL
|
|---|
| |