Gene CNB01890 details

Gene Information

• Locus tag: CNB01890
• ID: 3255772
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Cryptococcus neoformans var. neoformans JEC21
• Kingdom: Eukaryota
• Replicon accession: NC_006684
• Strand: +
• Start bp: 555557
• End bp: 557561
• Gene Length: 2005 bp
• Protein Length: 428 aa
• GC content: 47%
• IMG OID: 638254838
• Product: intracellular protein transport-related protein, putative
• Protein accession: XP_569119
• Protein GI: 58263418
• COG category: [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG5030] Clathrin adaptor complex, small subunit

Plasmid Coverage information

• Num covering plasmid clones: 27
• Plasmid unclonability p-value: 0.397687
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TCAATGTTGA AAGCCCTCTG AGTCTTGTTC GTGTGCCACC CCACCATGAT CTCAGTAAGT 
ATACCATTTT CCGGCAGTAC AGCGCTGACT TTGGACAGGC ATTCTTCATA TTCAACCAAA 
AGGGCGAGGT AAGACGCATC TCACATTCTT TGGACACTTT GCTAACCATT CGCCAGGTCC 
TTATATCGAG GCTATTTCGC TCGGATGTCA AGTAGGTGAA CTGGGCTGCC GCAACTGTTC 
ATGGCTGACA TTAAATGAAG GCGATCGCTC TCTGATGTTT TTCGTATCCA AGTAATCTCC 
AATCCCGACG TTCGTTCACC TATTATAACC CTTGGTTCAA CATCCTTCTT CCATGTGAGG 
GTGAACAATG TCTACATCGT TGGTGTCACA AAGTACGTTT CCTACCAATG AACTTTGGCG 
CCAATTCAAA CTAACGGTTT CCAGATGCAA TGCCTCTGCC GCCCTTGTGT TCGAGTTCAT 
TTACCGATTC ATCACCGTCG CGAGGAGCTA CTTTGGCAAG CTCGATGAAG AGAGCGTGAA 
GAATAACTTT GTTCTCATCT ATGAACTGCT TGATGGTGAG CGATGATGTA ATTATCCAAC 
GGTTGGGGAT TGCCATACTT ACTCAAGATG GATGTAGAAA TTATTGACTT TGGGTTTCCT 
CAAAACTCGG AGATCGACAC ACTCAAAATG TACATCACGA CCGAGAGTAT CAAATCTGAA 
ATGGCTGTGG TATGTCCCTT CTTGACTTTG TTACCTCTGA TTCCCTGGCA AACCCTTTCA 
TTCTGTAGCG CGAAGACTCG TCAAAGATCA CCATTCAGGC AACAGGAGCA ACATCTTGGC 
GACGCTCGGA TGTCAAGTAT AGGAAGAACG AGGCTTTTGT CGACGTTATT GAGACTGTCA 
ATATGTTGAT GAGTAAAGAA GGTGATCTGC AATGGTAGCA CCTTATTCTA GTTGCTGATT 
TGGCTACAGG ATCCATTTTG AGAGCAGATG TGGACGGCCA GATCCTCATG CGGGCGTATC 
TGAGTGGCAC CCCCGAGTGT AAATTCGGTC TCAATGATAA ATTGGTGCTT CAAAAACGGT 
ACATACATCG TAGTTTCCCA TCACAAATAT AATCGCTGAT AGTCATTGAA GGGGCGGTGA 
ACAAGCAGCC AAATCTGACT CAGCGGTGGA GCTTGACGAT TGTCAATTCC ACCAATGCGT 
GCGACTAGGC AAGTTTGATA GTGATCGATC GATCAGCTTT ATCCCCCCAG ACGGCGAGTT 
TGAGCTCATG CGGTATGTAC ATGCGGATAA AGTCTTGTGC GAGCTGACGG CTGGGCAGAT 
ACCGCTCAAC GACAAACATC AATCTCCCCT TCCGCCTTCA AACTCATGTC GTAGAACCTT 
CTAAATCTCG TGTCGAGTAT ACCATCCACC TCCGTGCCGC TTTCGACTCC AAATTGAATG 
CCAACAACGT TGTATTAAGG ATACCGACAC CACTGAACAC GACTGGCGTT AGAAGTAAGG 
TAGGTATAGG CAAGGCAAAG TACGTGCCGG GAGAGAATGT CATCGTCTGG AAGTAAGTCT 
TTGCGGCAGC TAGCCGTCCG CGTGAATGAC AAATGCTTAT TTATGTTCAG AATACCGAGG 
ATTCAAGGTG CTCAGGAATG TACCCTTACC GCCGAGGCCG ACCTCACAGC AACGACTCAC 
AGGCAAGCAT GGTCACGTCC ACCTATCCAG GTCGATTTTT CGGGTACGCC CAATTTGTCT 
TGCTATGTCC CATCAGGGAA GCTCGTACTG ATCGAATAAA ATTGCAGTTG TTATGTTCAC 
AGCGTCGGGT CTCCTCGTAC GATTCTTAAA GGTCTTTGAG AAGAGCGGGT ACCAAAGTGT 
CAAATGGGTA CGATACCTGA CCAAGGCGAA TGGCAGTTAT CAGATTAGAT TTTGAACGAG 
TTACTTTTGT CGCCCCTTGC CCATCGCGGA TGCAATATGG ACCAATTTTG TACATATATG 
TGTGATGCAT GATTAGTTAA CGACT 

 

Protein sequence

MISAFFIFNQ KGEVLISRLF RSDVKRSLSD VFRIQVISNP DVRSPIITLG STSFFHVRVN 
NVYIVGVTKC NASAALVFEF IYRFITVARS YFGKLDEESV KNNFVLIYEL LDEIIDFGFP 
QNSEIDTLKM YITTESIKSE MAVREDSSKI TIQATGATSW RRSDVKYRKN EAFVDVIETV 
NMLMSKEGSI LRADVDGQIL MRAYLSGTPE CKFGLNDKLV LQKRGGEQAA KSDSAVELDD 
CQFHQCVRLG KFDSDRSISF IPPDGEFELM RYRSTTNINL PFRLQTHVVE PSKSRVEYTI 
HLRAAFDSKL NANNVVLRIP TPLNTTGVRS KVGIGKAKYV PGENVIVWKI PRIQGAQECT 
LTAEADLTAT THRQAWSRPP IQVDFSVVMF TASGLLVRFL KVFEKSGYQS VKWVRYLTKA 
NGSYQIRF