Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CNB00270 |
Symbol | |
ID | 3255975 |
Type | CDS |
Is gene spliced | Yes |
Is pseudo gene | No |
Organism name | Cryptococcus neoformans var. neoformans JEC21 |
Kingdom | Eukaryota |
Replicon accession | NC_006684 |
Strand | + |
Start bp | 77609 |
End bp | 79104 |
Gene Length | 1496 bp |
Protein Length | 399 aa |
Translation table | |
GC content | 62% |
IMG OID | 638254679 |
Product | nuclear pore protein seh1, putative |
Protein accession | XP_568769 |
Protein GI | 58262718 |
COG category | [R] General function prediction only |
COG ID | [COG2319] FOG: WD40 repeat |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.0000774214 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCTGCAGA CCGACCTGCT CGCCCCCGCG CACGCAGACC TCGTCACCCG TACGTCCCGT CGCCCCGTCG CCTGTCCCCG GCGCAGCTCA CTCCGCCTGC AGACCTCACG TACGACTACT ACGGCGAACG CCTCGCAACA TGTTCCGCCG ACCAGCGCAT AAAGGTCTTT CGGAAAGACG AGCACGGTAA ATGGGCCGAG GACGCCAACT GGAAGGTGAG TGCACAGACC GCCGGCGCCG GCTTACCGCA AAGGCCCACG ACGCGCCCAT CCTCCACCTC TCCTTCTCGC ACCCGATCCA CGGCTCCCTC CTCGCCTCGT GCTCCCACGA CCGCACAATC CGTATCTGGG AAGAACCCTC CTTTTCCACG TCCGCCACCG CCCCCGCCGC CTCCACCTCG CGCGCATGGC TCGAGCGCGG TATCCTCACC GGCCCCACCG GCGCCATCCG CTCCGTCCAA TTCGGCCCCC CGGACCCCGC CCACGGCCTG CGTGTGGCCA GCATCGCCAC CGACGGATAC CTGCGCGTCC ACACCTCGCT CGACCCGAGC CTGAACGACT GGTCAGAGGT CGTCAGGATC CACGTCCCTT CCCTTCCCGG CCCGTCCTCC GCGCCCAGCG ACGACGGCGG CACCGGCACA GCGTCCTCCT CTGCCGCGGG CACGGGTCTC ACAGGGACAC TTGCCATGGC CAGTGCCGCG GGCGACAGTG GGGGCACGAG CCATCACCCG CACACATCTG AACTGGCCAC GGGCGGATGG GGACTCAGCT GGTGTAAAGA ACGATGGTGG GGTCCTCTCA TCGCCGTCTT TGCAGGTACC TCCCCTTCCC TCAAACTCGT CTCCCTCTCC CCTACCCCAT CATGCGTCCT GCTCCTCACT CCCTCCTCCA CTCCTTCCAC CACCTCTTCC GGCCCCACCC AGTACGCCCC ACTAACATGC CTCGCATGGG CACCCAACTG CGGGAGAAAC TACCACCTCT TGGCCACCGG CGCTCGTGAC GGCACCATCA GGATATGGCG AGTCGAACCC CCCGGCGAAC GGGGCAGAGT CGATTACGAC ACTGGCGGCG AAGTGGTCAA AGAGTGGAGG GGGCAGTGTA CCGGCGAGTT TGGAAAAGGT GGAGCAAGGA TCGGCACGGT GGATGTACGT CCTCTCCTTT CTCTCCCGTC CCACTCGAAA CTAACCTTTG GCTTGGCCCA CAGTGGAACG CAACAGGTAC AATGCTATCT ACAACAGACG ACGAAGGTAT CGTCAGAATA TACAAACGTG CGTTCTTTGA TCCCCGGACA TGACCACAAC TAACATCCCT GATGCGCTAG CTACGTACGC AAGAAGCTGG AGTCTCCTCG GATCGTTGGC GGCGGAAGAA CCTCCCCTGG AAGACGGTTT GAATGGCCAT TAAAAATCCT CGAAGCAAGA GGCGATAAAG TTACATTTTA TTTAATATGT ATAGCATCAG CAAATGCCAG ACTAGACAAA AATGCATGCA TACTTG
|
Protein sequence | MLQTDLLAPA HADLVTHLTY DYYGERLATC SADQRIKVFR KDEHGKWAED ANWKAHDAPI LHLSFSHPIH GSLLASCSHD RTIRIWEEPS FSTSATAPAA STSRAWLERG ILTGPTGAIR SVQFGPPDPA HGLRVASIAT DGYLRVHTSL DPSLNDWSEV VRIHVPSLPG PSSAPSDDGG TGTASSSAAG TGLTGTLAMA SAAGDSGGTS HHPHTSELAT GGWGLSWCKE RWWGPLIAVF AGTSPSLKLV SLSPTPSCVL LLTPSSTPST TSSGPTQYAP LTCLAWAPNC GRNYHLLATG ARDGTIRIWR VEPPGERGRV DYDTGGEVVK EWRGQCTGEF GKGGARIGTV DWNATGTMLS TTDDEGIVRI YKPTYARSWS LLGSLAAEEP PLEDGLNGH
|
| |