Gene CNL05260 details

Gene Information

• Locus tag: CNL05260
• ID: 3254867
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Cryptococcus neoformans var. neoformans JEC21
• Kingdom: Eukaryota
• Replicon accession: NC_006681
• Strand: +
• Start bp: 467514
• End bp: 469367
• Gene Length: 1854 bp
• Protein Length: 555 aa
• GC content: 49%
• IMG OID: 638254000
• Product: histone deacetylase 3, putative
• Protein accession: XP_568065
• Protein GI: 58261310
• COG category: [B] Chromatin structure and dynamics; [Q] Secondary metabolites biosynthesis, transport and catabolism
• COG ID: [COG0123] Deacetylases, including yeast histone deacetylase and acetoin utilization protein

Plasmid Coverage information

• Num covering plasmid clones: 33
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACCAACC TCCACTTTGG CGTCTGCTCT TCCACTAACC GTCTCCATCA AAAGAATCCA 
ACGAATGTAC TGCTTTGTTT GGTCTGCATC ATCTCTTCAG CGCAATCCTA TATTTCTCCA 
GACTATCAAC TAATGGTACC ATCTACAAGT TCAACAAATC ACTCTGCATT TAGAGTGTCA 
TACTTATGGT CGCCTGCTCT TCAACGTCTA TCCGACGACT TGCCTTCGAA TGTCGGACGA 
TCAAGTATGG TGCATGATTT GATCAGATCA CTCGACTTAC TTGACTTTGA AGAGCTGAAA 
GAGAGGTTCT TGAAAAGCGA TAATCCGGAA GATGAGGATG GAAAGAGTGA GGATGATGAC 
GATAATGAAG CGGACAGGAA CGAAGTTAAC AATGGAGATA AACAAGGGGC TGATGGAGAG 
CCCCAAAGAA GAAAACCGGG CAGCCCGACT GCGTCTCCAC CCCACGCCCA AAATAAGAAA 
GCCACAGTCG TATTTCCTCA ACCAAGTCTA GGTACCAAGG CATGTCTCCT AAAATACCAT 
GATCGCTCAT ACATAGGTAA GTCATCGTTG TAAACAAGCT GAAATTAGGT TGCTAACTCG 
TATATCAGAG CGCCTTCTAA TGGCTCACAC CGACAGAGAT CCTAATGATC CTACTCATCT 
CCCTTCTTCA CCTTCGTCAT CCGCTTCTTC TCCCCGGCCT GCCAAGATTG CTCGCACAGA 
TCCTTACAAT CTCTCGCACG ACAATCCTGT ATTTCCAACT TTAGCGTCGT ACATCTCCCA 
CGTAACAGCC GCTACATCCA CGGCGTGCCG TCTGCTTGCC ACTGACAAAG CTGACTGGGC 
GGTATGTTGG GATGGTGGCC GGCATCATGC GAAAAGAAAA GAGGCTGGAG GATTTTGTTA 
TGTGAATGAT CTCGTCCTGG GTGGCTTGTT GCTCTCCCGC GAAGGGCGAA TACCATTACC 
GTTGAAAGAA GGGGAAGATC CGAAGAGGCA GAGGACAAGG GCACCAAGGA TACTCTACCT 
TGATATGGAC CTCCACTACT CTGATGGAGT TTCAGCAGCC TTCCACTCCC CCACAGTATA 
TCCCTACCCC TTGAAAGAAG GCATAACCCC CCCGAAACCA CCAAACGTCC TGACCCTTTC 
CGTCCACCAC TCATCTCCCA TCTTCTTCCC TCCTCCTACA CCCCTCTCTC TCCTACCCTC 
CCCAGATACT GAATCTCCGT TCTCTCTCTC CATCCCACTC TCAGCTTACC CTTCCCGCCA 
AACATATGCG AAAGTTTTCA ACCAATGTAT CCAGCCGATC CGCGAAGCTT GGGATCCAGA 
CTACATCATT CTCCAGCTCG GCACTGATGG TCTTCCTGGA GATAGAGTGG GCCAGTACGG 
AAACTGGTCT GTTGATGGGG AAGGAGGGAT CAAGTGGGTT GTGGAGCGAG TGAAAGAGTG 
GGGGAAGAAA GTTTGTGTGA CAGGTGGAGG AGGGTATAGA CATGATAATG CTGCTAGAGC 
GTGGGCCGAG GTCACGGGCG TCTTGGTGAG TTATTACTGT CTGCATGGAA GGGTAAACAG 
CTGAAGACAG TACGGTAGCT GGATAGAGAC TTTGTCGAGG ACATGCCTAT TCCCCACCAT 
GATCATTTTG AGCAGTACGC TCCGTCTTTT ACTCTACAAG TGCCAGACAG CAAGTGATTC 
GTTTCCTTTG TCAAGGCCAA ATAATAACAA AAGATGTCTA GGCCATATGA GGGACGAAAA 
CAAGCCAGAA GATCTGGAAA AGGCTGCCGA AGTGTTCAAC GTCCTCGCTG AGAGAATTAA 
AATCATTGTA GACGCCAATT CATAGCCACG GCCATACACA ACGCATCTAT ACAT 

 

Protein sequence

MTNLHFGVCS STNRLHQKNP TNVLLCLVCI ISSAQSYISP DYQLMVPSTS STNHSAFRVS 
YLWSPALQRL SDDLPSNVGR SSMVHDLIRS LDLLDFEELK ERFLKSDNPE DEDGKSEDDD 
DNEADRNEVN NGDKQGADGE PQRRKPGSPT ASPPHAQNKK ATVVFPQPSL GTKACLLKYH 
DRSYIERLLM AHTDRDPNDP THLPSSPSSS ASSPRPAKIA RTDPYNLSHD NPVFPTLASY 
ISHVTAATST ACRLLATDKA DWAVCWDGGR HHAKRKEAGG FCYVNDLVLG GLLLSREGRI 
PLPLKEGEDP KRQRTRAPRI LYLDMDLHYS DGVSAAFHSP TVYPYPLKEG ITPPKPPNVL 
TLSVHHSSPI FFPPPTPLSL LPSPDTESPF SLSIPLSAYP SRQTYAKVFN QCIQPIREAW 
DPDYIILQLG TDGLPGDRVG QYGNWSVDGE GGIKWVVERV KEWGKKVCVT GGGGYRHDNA 
ARAWAEVTGV LLDRDFVEDM PIPHHDHFEQ YAPSFTLQVP DSHMRDENKP EDLEKAAEVF 
NVLAERIKII VDANS