Gene CNK01430 details

Gene Information

• Locus tag: CNK01430
• ID: 3254656
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Cryptococcus neoformans var. neoformans JEC21
• Kingdom: Eukaryota
• Replicon accession: NC_006680
• Strand: +
• Start bp: 417317
• End bp: 424941
• Gene Length: 7625 bp
• Protein Length: 2250 aa
• GC content: 49%
• IMG OID: 638253632
• Product: DNA polymerase epsilon, catalytic subunit a, putative
• Protein accession: XP_567821
• Protein GI: 58260822
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0417] DNA polymerase elongation subunit (family B)

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 0.0352674
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTACAACCCC CCCCCGCAAC GTATTCGCCC ATGCCCTCCA GAGGATCTTT CAGAGGACGC 
GGTCGGGGAT CCGGATCCGG ATTTGGAAGC AACACCCGGT TTACAGGCAG GCGACGGGGT 
CGAGGCGGAG GCGGCGGCGG CGGTGGTGTC GCATATGGGA TCGACCGCCG CCCCGCTACA 
TCTACTAATC AAGCTAATCG TGAAGATGGA ACCGCCGCCA CCGAAAAATT TGAAGAGGTC 
AAGGTCTACG ATGAGATTGA TGAAAAGATT GGATTCTGGA GGTTTGAGAG TGTGAGGGCA 
GAGGGCGAAG AAAAGGTCGG CTGGTTGGTC AATATGCACC AGGTCAGTTA TCCGGGTCTT 
GCAGCGCGCG CATAAGTGTG ATACTGACGC GCGGGGGTTT GGCCCGATTG TAGACACTTG 
TGCCGAGCGA TGTGCACCCT GGAGGTCTAG CGGCTGTCGA CTACTATTTC ATCCAAGATG 
ATGGAGGCTC ATTCAAGGTG TCCATACCTT ACGAGCCGTA TTTCTATCTT ACCTGTCGGG 
TAAGTCGTAT TTCACACCTG GGTGTTAACG AGTTAACACG TCGGCAGGGG GGAACAGAGA 
GCATCGTCGA GGAATGGCTT TTGAAACGAT ATGAAGGTAT CATCATAAGG ATAGAAAGAG 
AAAAAAAGTG GGATCTAAGC CTCGTAAGTT GCGGTCATGT GCTGGAAACA TCATCACACG 
CTCGCACAAG CTCATTCAAT CGCATTGTCC TTCCAGCCAA ACCACCTTTT ATCGGCACCT 
CCAGTATTCC TTAAACTGTT CTTCCACAAT ACTGCCGATC TCCAGACTAT CCGACGTGAC 
TTGCTACCTC TTGCACGCAG CAACTCTGAA AAATTCACGG CCGTTGATGC GTATGCCGAT 
GTGGTCAGTG CGGAGGCGGC AGCCAACGGT CATGGGGATG ACGAAAACAG AGCATGGGGT 
GCAGAGGACG ACACGAAAAA GAAGAAGGAT AAAGAGCCGT CAGAATGTAT CATTGAAGTC 
CGAGAACATG ACTTGGCGTA CCATTTACGA GTGGCAATCG ATCTCAGTGA GCTTTTTACT 
CCTCACGCGG GAATCGGCGC TGATATCACG CACCATTAGA TATTCGTGTC GGACTCTGGT 
ATACCGTCAC CTCCCGCACG GGCGTTATAA CGCTGGAACG AATACCCGAT CGTGTCAAGC 
GTGCGGACCC AGTCGTCATG GCGTATGATA TCGAAACAAC AAAGCAGCCC CTCAAGTTTC 
CAGATCAACA AACGGACCAA ATCATGATGA TTTCTTACAT GATTGACGGG ATGGGCTACT 
TGATCACGAA TAGAGAGATT GTGGGTGAAG ACATTGATGA TTTTGAATAT ACACCAAAGG 
ATGAGTATCC CGGTGAATTC ACAGTGTTCA ACGAGCCTGA CGAGGTGAGC TTAGAGAACG 
TCGGGTGGAT AAACGAAAAA GAGTAGCTCA TGTTTTTTTA CCAAGCCTGC GGTTATCCGG 
AGATGGTTTG AACATATCAG AGATTCCAAG CCAACCGTCA TCGCAACGTA TAACGGTGAT 
AGTTTCGATT TTCCTTTTGT CGATGCAAGG GCCAAGATAC ATGGAATCAG CATGTACGAG 
GAAATTGGAT TCAAACCAGA TATCGAGGAA GAATACAAGT CCCGATCAAC CATGCACATG 
GATTGTTTCA GGTGGGGTTG CACTTTTTTT TTCAGTTTTC CACGCATAGC TAATAACGGC 
AAACAGATGG GTCAAACGAG ACTCGTATCT TCCACAAGGT AGTCAGGGCC TCAAAGCTGT 
GACTACTGCC AAACTCGGAT ACAACCCCAT CGAACTCGAC CCAGAATTAA TGACGCCGTA 
CGCCATCGAG CAACCCCAAA TATTGGCTCA GTATTCCGTC TCCGACGCGG TCGCCACATA 
CTACCTCTAC ATGAAATACG TTCACCCCTT CATCTTTTCG CTGTGTAACA TCATCCCTTT 
AAGTCCAGAT GAAGTGTTGC GTAAAGGAAC AGGTACGCTC TGTGAAACCT TATTGATGGT 
ATGTTCCACT CTTTCAAAGC TCGAAAGCTC GAGTTTATCG ACTGATCGTC TTGGCAGGTT 
GAAGCTTATG ATGCTCATAT CATTATGCCT AACCGTCATG AAGATCCCCA CGGAGTGACA 
TACGAGGGCC ACCTACTCGC GTCTGAAACA TATGTCGGAG GCCATGTTGA GGCTCTGGAA 
GCTGGTGTGT TCAGGAGCGA CATCCCGACT CACTTCAAGA TCGTGCCAAG TGCCATACAA 
GAAGTACGCC CACGCTTGGT GATGCCGTCA CATTTTTGAC ACTGACGATC TGTGACAGCT 
TATTGATGAT CTCGATGCGG CACTCCGATT CTCCTTGATT GAAGAAGGTC AAGTCAAACT 
CGAGGATGTA GAAAACTACG ACGAGGTTAA ACAGCAAATC CAGACCGCTC TCGAGACCAT 
GCGGGACGAA CCCAATCGCT TCGACAACCC TTTGATCTAC CATCTTGATG TCGCCGCCAT 
GTACCCCAAC ATCATGTTGT CAAACCGTCT ACAGCCCGAT TCAGTCAAAG AGGAAGCAGA 
TTGCGCAGTG TGTGACTACA ATCGACCTGA CAAGAAGTGT GATCGGCGTA TGGAATGGGC 
ATGGAGAGGA GAATACTTCC CCGCGAAAAG AGACGAAGTT AACATGGTAC GCTATGCTCT 
GGAACAGGAA ACGTTCCCTC CAAAACGTCC ATATGACCCA AAGCGCCGTT TTGTCGACTT 
GACGCCCACA GAACAATCTG CCCTTCTTCA CAAGCGTTTA GGGGACTATT CTCGAAAGGT 
ATACAAGAAG ACTCACGACA CGAAGATTGT CACCAAGACG ACAATCATTT GCCAGCGAGA 
GAACTCGTTC TATATCGATA CTGTCCGGGC ATTCCGAGAC CGTCGTTACG AGTACAAGGG 
TCTCCACAAA ACCTGGAAGA AAAACCTCGA TAAGGCATTT GAAGAAGGTG GCGCGGTTGC 
AACAGTAGAT GAGGCCAAGA AGATGATTGT ACTCTACGAC TCGCTCCAGC TTGCACACAA 
GTGTATCCTC AACTCTTTCT ACGGTTATGT CATGCGAAAA GGAGCGAGGT GGTATTCGAT 
GGAAATGGCA GGCATTACTT GTCTGACTGG TGCCACTATC ATTCAGATGG CAAGGCAGCT 
TGTTGAGCAG ATTGGGCGGC CGCTAGAGCT GGATACAGAC GGTATCTGGT GCATGTTGCC 
TGGTGTTTTC CCCGAGGACT TCAACTTCAA GCTCAAGAAT GGCAAGAAAT TTGGCATCTC 
GTATCCTTGC ACCATGCTCA ACCACCTTGT CCACGCACAG TTCACCAACG ACCAGTACCA 
CGAACTTGTT AATAACGACT CTGGTACGTA CAATGTCAAG AAAGAAAACT CGATCTTCTT 
CGAACTGGAT GGGCCTTATA AAGCTATGAT CCTTCCGTCT TCAAAGGAAG AGGACAAATT 
GCTCAAGAAG AGATATGCCG TCTTCAACCC TGACGGCTCC CTCGCGGAGT TGAAAGGATT 
CGAAGTGAAG CGTCGAGGTG AACTTCAAAT GATCAAGATC TTCCAAAGTC AAATCTTCGA 
CAAGTTCTTG CTGGGCAAGA CGACCGAGGA GTGCTACGCT GCCGTCGCCA CCGTTGCCGA 
CCAATGGCTC GATATCCTTC AAAGCAAGGC CTCAAGTCTT CATGATGATG AATTGGTCGA 
CTTGATTGCC GAGAACCGTA GCATGTCGAA AACACTGGCC GAGTACGCTG GTCAAAAGTC 
TACTTCGATT AGCACAGCAA GAAGGCTGGC GGAGTTTTTA GGCGAGCAAA TGGTCAAGGA 
CAAAGGTCTT TCTTGTCGAT TCATCATCTC TGCGAAACCT AACGGTGCGC CAGTCACGGA 
GCGAGCTGTT CCTGTTGCGA TCTTCACAGC TGAAGAGCCC GTGAAAAGGC ATTATCTCCG 
CAAATGGCTA AAGGACAACA GTCTTACGGA CTTTGATCTT CGTACTATTC TCGACTGGGA 
CTATTACACT GAACGTCTTG GTTCCGTCAT CCAGAAGCTC ATCACCATCC CCGCCGCCCT 
TCAAAAGGTA CCAAACCCTG TACCTCGTAT CCGACACCCC GACTGGCTTT ATAAACGTAT 
TGCCACCAAA GAAGACAAGT TCCAACAGCA CAAGATCACT GATATGTTCA CAAAGTTGAA 
GGATATGGAA GATTTGGGAG ACGGACAAAA GAAAGTTGGA CCCAAACTGG CTGTGGTTAG 
GAGAAGAAAC AGGAAGGAGC AAGAGAAGGA ATCGGAGGTC GAGGAAGTCC CACCCGAACC 
CGAATATGAC TATGCTGGGT ATATCAGGAT AATGAAAAAG AAGTGGCGCA AGCAAAGGCA 
GGAAAAAGCT CGAGCGCGCA AGTCTGGTCT TCGGCAAGAC GGCACTATTT CCTCCATGCT 
TCGCACGCAG ACGTCTAGTA TGAATTCAAA GCAATGGGAC GTCATCCAGA TCGCCTCCAC 
CAACCGGCCG GGAGAATTCA AACTCTGGCT TGCCATTGAT GGCACCTTCC AAAGCGTGCG 
ACTGAAGGTA CCCCGAGAAT TCTATCTTAA CTTCAAGGAA GATCCCGAGC CTCAGATGCT 
AGCTACAGAC CGCTATGAGG CGGTGGAGGT CGTCAGGACA TTACCTCGAG GACAGCCTGC 
CAGACATCTT TACAAGCTGT CGGTAGATGA AGTGCTTTTC ATGGAAGGAG AATCGCACTT 
TTCCACTTTG ATCAACAACC CGAACGTGGA CGGTGCTTTT GAGCTCCAAG TTCCCCTTGT 
CGTTCGCGCA CTCCTCAGCC TTGGGACTTC ATGCGCCTTA CGCTCTAATA TCCTGGGGGG 
TCTCAACCGC GGCCTGGACA AAGGTTTCGA TCTCGTTGAT TTGGAACGCT CAGGAAACCT 
GTCTAGGCGC AAGTATCTCA ATGAAGGTCG CGGGATTAGG TACCACTTCC TCTTCCATGC 
CGTTGCTGAC CAACGACATA TCATTGGCCT TTTCTCCCCC GATTCCACCA ATGCTTCTAT 
CTACCTTGTC GATCGCGCCA AGAACCGTCA ACAGCTGCCT AATCCGTTGA AATTCTATAC 
CGACCGAGTT GAGCGTGCAG AACGTGGTGT CTTCTCTTAC CCCGATATGC TTGACTTCAC 
TACCTCATAT CATTCCTCAG AGTCATCCGC ATTCAAGGCC CTTGGGAAAG ATCTCCAAGC 
CATCAACCAC GGTCTTAATG TTATTGCCCT TTGTTCGCCA TTTGAGCATT CTTACTACCA 
GGCAAAGGCA CCAGTCTATT CCAACTTCCC GTTCATAACA TATAGACTAG GGAAAGAGGA 
AGACCCAGGT CTAATGTGGC TGTTGCAGAC GTCGAGGAGG ATGATTGGAT TGTACTTGAG 
GCTGTCCAGC TGGTTGAAGG AGCAGATTCA AATTGCATCA CACTTTGATG TTCCTATCGG 
CGTGAGTGCA TCCATCTGGA GGGCTAAGAG ACAAACTAAT CCCCGCTGCA GAACCTGGGT 
GCCGATATAG CGGTGTTCCT TGCGGATATC GAGTTCGCAC GTAGACTCAA ACAGCAAGAC 
ATGCTCATTT GGTGGTCATC GACTCCCCGA CCAGATCTTG GTGGTTCCGA AGAAGATGCT 
AACTCTAGCG AAGATCTCGT TTCTCCTCAC ATCTCAAACC GCGGCTGTTA CTCATCCACC 
GTGCTGGAAA TGGAGGTGTC CGATCTTGCT ATTAACGCTG TCCTTCAATC AGCTCTCGTC 
AACGAAATGG AAGGTTCAGG AACTGGTTCG CTCGCCTTTG ATTCGGCATC CCATAACCTT 
GATGAGTACG CCAAGGGTGC TGTCAACACA TCGGTCATGC TTGGAGATGC CGTACTTTCC 
ACCCAAACCT TTGGGGTTCT TAAGTCAATG CTTCGTGCAT GGTATGCTGA CAAGGCTCGA 
GCTCATGTCA AAGGCGACTC ATTGTCGCCT GCCGAGATCG TTGTCGATCA ATTTTGGCGT 
TGGATCAGTT CATCAACCAG CAGCATGTTT GAGCCAGCTC TCCATCGTTT CCTTCATGGC 
TTGATGCGCA AGACATTCCT GCAGCTCCTC GCAGAATTCA AACGGCTGGG TACCCAAGTC 
GTCTACGCGG ATTTCGGCCG TGTTTTCCTT CTCACCTCCA AACCTGATGC TGGCAGCGCG 
TTTGCATTTG CAAAATACCT AGTTGCCGCT GCCAACTCAC AAGAATTGTT CCGCCATCTC 
ATCATCGACG TCGCCCAGTT TTGGAACTAC CTTGCGTGGA TGGATGTTGC CAATTTCGGC 
GGTGTCAAAG TCTCACCTGA AACTGCGGCG AGTCGAGAGC CGCCAGCGAA AAGGTTCGAG 
ATTAGTATGG ACTGGAACAT CCAATCCTTT TTGCCCGGCA CTCTTCAACC TGTGTTCGAA 
AGAAATGTGG CGAGCTTCAT ATTTTCCCTT TACAGTGCTA AGCGCTCGTC CAGCGATGGC 
AGAGAGCCTC TTAGAGTCAT CCACAGTCTC AACATTGATC AGCCTGGTAC AGAAGCCACA 
TCAACAATGA ATCCTACGAA AGAAAAGGAG AAGAAAGCTG CCTCCAAGAG CATCTCACAA 
ACTCTTACCC GTCGACTTCT TTCTGATATT GCTGCGGTCA AGCGTCAACA AGCTGCTGTG 
CACCTTGAGC CGGAAGAGGC CTACACCCTG GCTTTTCCCG ACTTGCCTGG AGCTAGGTCG 
AAACGCATTA ATCCCACCCT CGAGCTTATT AAGGCCATTA CGGAGGTCTA TTCTCTCGCT 
TCTGAGCATA GCATTGAAGT GCAAATTCTC AAGCGGAACT TGCTGGACTT GATTGGTGTC 
AAAGAGTTCT CGAGCGATGC GGCCTTTAAT CCTCCATGCG AAAGTATTGA GGTGCCCATG 
GTGATTTGCA AAAAGTGTAA CGCGATCAGA GACGTCGACC TATGCAGAGA TCCCGACAGG 
TTGCCTAGTG TTAACCCAGA TAGCGGTGAA ATGTTGGAAC CAGCGAGAAA GAACTGGGTG 
TGTCATGTAA GTCAGGCTAC TCTAGATCCA GGTGTGGTTG CTGATTATGT TGCAGAAATG 
TGACTCTGAA TATGATCGAT TCCAGATCGA ACAACCTCTC ATCGAAATGG TCACCAAGAC 
GATCACCAAC TACCAAATAC AAGACGTAAG TCTCATCATT GGTTATCAGA AAGTTGGCTA 
CTTATTGACA TCCTTCATTC ATCAGGTGAT CTGCCTCAAA TGTTCGCAAA CGAAATCGGA 
CAATCTTGCG GCGACCTGCA AATGTGGTGG AGGATTTAGG ACGACGTCAA ACAGAAATGA 
ACTGAAGACG AAGCTGAAAA TGATTAAGAG TGGTAAATGT CTTCGTCCGA TCCCTGTCTG 
GCTGTCTGGC TAACTATAAT CCCATAGTAT GTGATTACCA TAAATTGCCC TTTGCTGGTA 
GTTATGTGGA AGAGACTTTG AGTCGGTGGT AGGCGTTAAT TAAGAGGACT TCGAGGCAGT 
AGTGCAGCAG CAATTGTATT TGGGGGCTTG TTTCGGCGCT TCTGGTTGTA TTTCGTAGTG 
TTATTTCCTT GTTCTCCACC GATTTGACTC CATACATTTT CCGCATCTGC ATATAGACCG 
ACTGT 

 

Protein sequence

MPSRGSFRGR GRGSGSGFGS NTRFTGRRRG RGGGGGGGGV AYGIDRRPAT STNQANREDG 
TAATEKFEEV KVYDEIDEKI GFWRFESVRA EGEEKVGWLV NMHQTLVPSD VHPGGLAAVD 
YYFIQDDGGS FKVSIPYEPY FYLTCRGGTE SIVEEWLLKR YEGIIIRIER EKKWDLSLPN 
HLLSAPPVFL KLFFHNTADL QTIRRDLLPL ARSNSEKFTA VDAYADVVSA EAAANGHGDD 
ENRAWGAEDD TKKKKDKEPS ECIIEVREHD LAYHLRVAID LNIRVGLWYT VTSRTGVITL 
ERIPDRVKRA DPVVMAYDIE TTKQPLKFPD QQTDQIMMIS YMIDGMGYLI TNREIVGEDI 
DDFEYTPKDE YPGEFTVFNE PDEPAVIRRW FEHIRDSKPT VIATYNGDSF DFPFVDARAK 
IHGISMYEEI GFKPDIEEEY KSRSTMHMDC FRWVKRDSYL PQGSQGLKAV TTAKLGYNPI 
ELDPELMTPY AIEQPQILAQ YSVSDAVATY YLYMKYVHPF IFSLCNIIPL SPDEVLRKGT 
GTLCETLLMV EAYDAHIIMP NRHEDPHGVT YEGHLLASET YVGGHVEALE AGVFRSDIPT 
HFKIVPSAIQ ELIDDLDAAL RFSLIEEGQV KLEDVENYDE VKQQIQTALE TMRDEPNRFD 
NPLIYHLDVA AMYPNIMLSN RLQPDSVKEE ADCAVCDYNR PDKKCDRRME WAWRGEYFPA 
KRDEVNMVRY ALEQETFPPK RPYDPKRRFV DLTPTEQSAL LHKRLGDYSR KVYKKTHDTK 
IVTKTTIICQ RENSFYIDTV RAFRDRRYEY KGLHKTWKKN LDKAFEEGGA VATVDEAKKM 
IVLYDSLQLA HKCILNSFYG YVMRKGARWY SMEMAGITCL TGATIIQMAR QLVEQIGRPL 
ELDTDGIWCM LPGVFPEDFN FKLKNGKKFG ISYPCTMLNH LVHAQFTNDQ YHELVNNDSG 
TYNVKKENSI FFELDGPYKA MILPSSKEED KLLKKRYAVF NPDGSLAELK GFEVKRRGEL 
QMIKIFQSQI FDKFLLGKTT EECYAAVATV ADQWLDILQS KASSLHDDEL VDLIAENRSM 
SKTLAEYAGQ KSTSISTARR LAEFLGEQMV KDKGLSCRFI ISAKPNGAPV TERAVPVAIF 
TAEEPVKRHY LRKWLKDNSL TDFDLRTILD WDYYTERLGS VIQKLITIPA ALQKVPNPVP 
RIRHPDWLYK RIATKEDKFQ QHKITDMFTK LKDMEDLGDG QKKVGPKLAV VRRRNRKEQE 
KESEVEEVPP EPEYDYAGYI RIMKKKWRKQ RQEKARARKS GLRQDGTISS MLRTQTSSMN 
SKQWDVIQIA STNRPGEFKL WLAIDGTFQS VRLKVPREFY LNFKEDPEPQ MLATDRYEAV 
EVVRTLPRGQ PARHLYKLSV DEVLFMEGES HFSTLINNPN VDGAFELQVP LVVRALLSLG 
TSCALRSNIL GGLNRGLDKG FDLVDLERSG NLSRRKYLNE GRGIRYHFLF HAVADQRHII 
GLFSPDSTNA SIYLVDRAKN RQQLPNPLKF YTDRVERAER GVFSYPDMLD FTTSYHSSES 
SAFKALGKDL QAINHGLNVI ALCSPFEHSY YQAKAPVYSN FPFITYRLGK EEDPGLMWLL 
QTSRRMIGLY LRLSSWLKEQ IQIASHFDVP IGNLGADIAV FLADIEFARR LKQQDMLIWW 
SSTPRPDLGG SEEDANSSED LVSPHISNRG CYSSTVLEME VSDLAINAVL QSALVNEMEG 
SGTGSLAFDS ASHNLDEYAK GAVNTSVMLG DAVLSTQTFG VLKSMLRAWY ADKARAHVKG 
DSLSPAEIVV DQFWRWISSS TSSMFEPALH RFLHGLMRKT FLQLLAEFKR LGTQVVYADF 
GRVFLLTSKP DAGSAFAFAK YLVAAANSQE LFRHLIIDVA QFWNYLAWMD VANFGGVKVS 
PETAASREPP AKRFEISMDW NIQSFLPGTL QPVFERNVAS FIFSLYSAKR SSSDGREPLR 
VIHSLNIDQP GTEATSTMNP TKEKEKKAAS KSISQTLTRR LLSDIAAVKR QQAAVHLEPE 
EAYTLAFPDL PGARSKRINP TLELIKAITE VYSLASEHSI EVQILKRNLL DLIGVKEFSS 
DAAFNPPCES IEVPMVICKK CNAIRDVDLC RDPDRLPSVN PDSGEMLEPA RKNWVCHKCD 
SEYDRFQIEQ PLIEMVTKTI TNYQIQDVIC LKCSQTKSDN LAATCKCGGG FRTTSNRNEL 
KTKLKMIKSV CDYHKLPFAG SYVEETLSRW