Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CNK00930 |
Symbol | |
ID | 3254392 |
Type | CDS |
Is gene spliced | Yes |
Is pseudo gene | No |
Organism name | Cryptococcus neoformans var. neoformans JEC21 |
Kingdom | Eukaryota |
Replicon accession | NC_006680 |
Strand | - |
Start bp | 290985 |
End bp | 295814 |
Gene Length | 4830 bp |
Protein Length | 1065 aa |
Translation table | |
GC content | 45% |
IMG OID | 638253583 |
Product | DNA ligase (ATP), putative |
Protein accession | XP_567656 |
Protein GI | 58260492 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1793] ATP-dependent DNA ligase |
TIGRFAM ID | [TIGR00574] DNA ligase I, ATP-dependent (dnl1) |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | AAAGTTATAT CACCACTGGA AATGGCAGTA CACGCTCCAT ACAATCATGC ACCTCCGCCC ACTCAAGAAA TAAATGGTCA GAAACCGACA TTAGCCCCCG CGATAACTCT CGAACGTCCA GCGGACTGTA TCAACCGCGG CCAGTATCCC GCTTTCTACA TTATCTGCGG CTATCTTAAC AGACTACGGG CAGATGCGCC GCACAAAAAG TACGAGCTTC TGACGAGGAT ATTCGGGAAC TGGAGGGAGA AAGTAGGGCC AGATCTTTAT CCGTTGATCA GGTTGTTGTT ACCTGATGTG AGTCTTCGGG TCACGGCAAG AACATAGGGA ATGTGATGCT AAAGGGTTTC TTGCAGAAAG ATAGGGAAAG ACCCGTGTAT AATTTGAAAG AGTCAATGTT GGCTCGATGC TACATTGATA TATTGTCGTT AGAGAAGCAC AGCGAGGCGG CTCAGAGGTT GATCAAATGG AAGCAGCCGG CAGGAAATGT CAGTCGTTCA TGTGTTCCCT CAGTAAACGA ATGTGGAAAC TGATGATTAG CAGTCACCAA ATCCAACTGG AGACTTTGCG AAAGTCTGTT ACAATGAGAT AAAAGCTCGA TCCACCGTGG AGGAAGGGCA ATTGAGTGTT GAAGCAGTAA ACATGCTCCT AGATAAGCTG GCTGTTGGAA AAATGAAGCA GTGAGTTTTA TTGTTCGTCA AGGTATACTC AGCTCAGCTC ACTGATGATT GATTATAGAA AAGATTACGT GCCGATACTC AAGGCAATCA ATATGCAATG TACAGCTGAG GAACAAGAAT GGATTATCCG GATTATACTC AAAGGTAAAT ATGTATTTTT TCCACGTTAT ATTCACTCTG ACAATAATCT TCTCAAGACC TGCATATCTC AATACGTGAA CGAGGGGTCT TATCAGCGTT TCATCCGGAT GCGATAGATC TGTATAATGT TTGTTCAGAC CTGAAGCGTG TCTGTTGGAC TTTGTATGAT CCCGGCTTCA GGCTCAATAA AAATGTTTGC CATTCTTGTT AAACCATCTA TCCCGAGCTG ACGACGATTC AGGAAACGCA TCTTGAATTA TTCCACTCCT TTCTCCCTCA ATTATGTGGC CGCATGAATG ATGCGTCGCT CGAAAATATT GCGAAGGCTA TAGGAGCGCC AAAAGAGTTC ATCATGGAAG AAAAGTTGGA CGGGGAGAGA ATACAGTTAC ACATGAGAGG AAATGGTGCA CAATGGTTCT ACTGTTCAAG GAAAGCTAAA GACTATAGTA AGTTCCTTCC GACTTATTTT TGAGTACTGG ATAAAATTAA CTTCTGGCAG CGTATCTATA TGGCGCCCAC CCAGGAGAGG GAAGCTTGAC GCGCTACATA GCTACTGCGT TCCAGGACAA TGTCAGAAAG TAAGCTCTAT GTCTTGTATC ATAGATATTA TTGGGTACTC ATGTCATGGA TTAGTGTCAT TCTTGACGGA GAGATGATGG TTTGGGATCC TGTAGTGGAA CGTTACCTGG CTTTTGGGAC CCTCAAGTCA GCTGCACTTG GTGAGTTATC CGTTTGGAAA CCTTAAGATT TGTCGTTGAT TTTCGAAAGA CCATTTCAAT GATGAAACCG CCCCTCGTCC ATGTTGTAAG CCCTCAGTAC CTTTTCCTTT ATCACTCTTT GACTAAGCTT TTTCATTAGT CAAGGTGTTT GACATCCTTT TCTTGAACGA TCATTGCCTT TCCCGCAAAC GTTTATCAGA ACGCAAGCGT CTCCTTCGCT CTGGAAAAAT CTTCAAGAAT ATTGAGAACT ATAAGGGGAG ATTGGAATTT GTAGACGAGA AAAGAGGGAA GAACGCAAAG GATATTAGAG AGTATTTGGA AAGAGTGGTC GAGACCAAGT AAGTCAATCG ATCTCGGCTT AATATGATCC GGGAGTAAAG CTAACCATGA ATTGTTAGAG GCGAAGGTTT AGTGGTTAAG AAGACGGATG TGATTTATCA GACGAACTCG AGAGGATATG ACTGGATCAA GGTCAAGCCC GAGTATAGTG ACCAAATGGG TGAGGTATGT CAAGATACTA CTTTTATTTG AAGCAACGAC TGATATCGTT TGTATAGAAT TTAGAAGTCT TGGTGTTGGG CGGATGGTGG GGTAAAGGAG GACGTTCAGG GAAGATTTCA AGATTACTCT GCGGGTTAAG AGAACAGGCG TTTGACGATG GTACAGTGGA AAGACCAAGG TAACGATTAT TAATCTATCT GCCTGTTAAG GAAGTTGGGG TTGACTGATG ATGAAACAGC TTCAAGACTT TCTGTTCAAT CGGTTCTGGA ATGAGCTACT CGGACTACGA GTGGATTTTG TAAGTCACCT CATGCACTTG CGTTCAATGA GGTGCTCACC TACTCACCTA TCACAATGCA GGAATAAACA CAAGAAGCAT TGGAGACCTT TTGATAGGTC CAACCCACCC CCTTTCATGA AGCTTGGGCC AGTGGGTCTC GATGACAAGC GTGAGTTGAT CCAAACGCTC TGATATGATG AGCTAAATGA GATTTAGCGG ATGTTTATAT CGAGCCGGAA AAGTATGTTA CTCTGGACAG AAATTCAAAA TGTAAATAGT TGCTGATAGC TGTATAGCTC TTTCGTCATC GAAGTAAAGG CGTCTGAAAT CGTGCCGGCA GGTCGGTCGC TGTCCAAAGG CTCTTTTCGA TGTTTTGTTC TAACGATACG CGCAGGAGGC TATGGAATAG GATTTACTCT TCGTTTTCCA CGCTGTAAAT ACATTTACTA CGACAAGAAT AGTCGAGACT ATGCGCTCGA TGATGAGTCG AAAGAGAGGG ATATGTGGAC TAGTGTAAGT CTATTTGGCC CCGAAAGTCA GATTTAATGC TGATCAAATT GGCGAAAAGA TGTCTGTGGA CGGTAGGTCA AGGATTTTTT TATAAGACTA GGAAACTCAT AAAACGGACA GACTTCATGG ACCTCTTCTC AAGGCCCAAG AGGTCGTATG ACGATAGTCA AGGTCCTGGG TGAGTGCCAT TGTCTTCTGT TGACGGGATC AGAAGGTTAA CAGTGCAGCA GGAAAAGGAA GAAGCGCAAG GTGATCAGGT CTAAAGTAAG TTCCCATGTA GATCTCCGCT GTGTAAGGAA ATCAACTGAA GTGACATGCA GAAAAACCAC CTCATCAGCA ACTTCCGAGG TCAGAAGCTT TCAGATGCAG ATGTGGAAAC GAGCATATTC AGCGATATGA CGTTTTGTTA GTCGCGCAAA CCTTGGTTAT CTTGTCTTTC ACTGACGTAT GAGTATAAGT TATTGTGAAG GGCACATCCG ACTACCCTAA AGCTGATCTC GAAGCACTTG TGCATAAGCA TGGTGCAGAT TTCACGCAAG CGCAGCTGTC CGACCTATCG GCGATTGTTA TCTCTCCCGA TCAAAAGAGT CAGTATTGTA TAATTGATTG GGGATCGTGT GAGTAGATGT GCTGACTCAT TGATAGACCC TTTAGTACGA GCCCAGATCA GACACGGAGT CAATGTCATC AAACCTGAGT GGGTATTTGA GAGTATTGCG CGGAGGACAG CATTGCCTTT CTTAAAGGAG TAAGCCCTTT CTTTACACGC AGCATGTCTT TTCTTCAAGT GCTAAATCAT TTGCCAGATT CCTGGTCTTC GCATCGGAAG AAGCTCAAGA TGGGCGATAT TACAATAAGA CACTTGAGCA ATACGATAAG GTTTCTTTTG TGCGCGATCG TACCGGCGGG GCACTCGTCG ATGAAGATGG TGATGCCGAT GTCGAAGATG AGATCATGGA TGGTGAGGAC AAAGATGAGA TTGACGTGGA AGAAAGTCGA GAATCCAAGA ACCGAAGGAT GGCCAGAGAA GATCTCAAAG AGAAAGAATC GAATAGAACG CTGGAGCAGA AGAAGCTTCA GGAAGCATGG GGTTTGAGAT CACGAGCGAG TCCAGGAGAT TCCGATAGTG AACCTGAAGA GGAGATGTCG CTGAAGGAGG AGAGTGACAC GGATTCGGAA AGAAGTAGGG GGCTCCGGGT ACGTCGCCGT AACCGCATGA TATGTTGATT ATTGCTGAAA TTCATCTCGT AGGCGATTTA TGAAGATGAA GAGGACGGAG AAAACGACAG TCATGAATCA GATGTTGGGG TAAACGGAGA TGATTACAGA GCGGTTCCCC TCAGCGGGTT GAATGACAAG GAGGTGGGTC GTTGCTGACT GACATTTTAC TACAAAGTGC TGATCAAATC GACAGGAAGG ACTTATGGGA GAGAGTCCAG AAGCAATGCA CTATGATGAA GATCGAGTAC GTTCTTCACC GTGTACGGCA GATGTATGAA TGTATACTGA TGGTGCGGAA GATTTTCTAT CACCTTGCAT TTTACATCGA TACTGCAAAG AACGCTGCGG TTAACGGCTT GGAAAGCTCG TCTCCCTCTT TCGACACCCA AGAAAGGTTA GTCCTCCATT CTCTCATGGG GGCATCGAGC TGATCAGTTT CTCAGACTCG TCAAAGTCGA GAAGCTGCTG ATAGAGAATG GTGGACGTGT GGCGAGAAGC ATCTCCGATC CCAAGCTCAC GCACATTATA ATGGATGATG AGGATTCGAG AAGATACGTC GAGTTGACGA GGAAGACTGC CATGTGAGTT GGTCCTGTCA TGTATGTTGT GGCTCTAACC GAACTATTTG ATAGGCCCAA AAGGAAACAC ATTGTGACCC CCAAATGGGT GGAGGATTGC GTGGATGAAG AGACATTGCT GGACGAAGAT CGTGCGTTAT TTGTCTTTCG CGCCATCATG CTGTCCACTG ACTATTGTTG CAGTGTACAA GCCCAAGTAA
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Protein sequence | MAVHAPYNHA PPPTQEINGQ KPTLAPAITL ERPADCINRG QYPAFYIICG YLNRLRADAP HKKYELLTRI FGNWREKVGP DLYPLIRLLL PDKDRERPVY NLKESMLARC YIDILSLEKH SEAAQRLIKW KQPAGNSPNP TGDFAKVCYN EIKARSTVEE GQLSVEAVNM LLDKLAVGKM KQKDYVPILK AINMQCTAEE QEWIIRIILK DLHISIRERG VLSAFHPDAI DLYNVCSDLK RVCWTLYDPG FRLNKNETHL ELFHSFLPQL CGRMNDASLE NIAKAIGAPK EFIMEEKLDG ERIQLHMRGN GAQWFYCSRK AKDYTYLYGA HPGEGSLTRY IATAFQDNVR NVILDGEMMV WDPVVERYLA FGTLKSAALA FSLVKVFDIL FLNDHCLSRK RLSERKRLLR SGKIFKNIEN YKGRLEFVDE KRGKNAKDIR EYLERVVETK GEGLVVKKTD VIYQTNSRGY DWIKVKPEYS DQMGENLEVL VLGGWWGKGG RSGKISRLLC GLREQAFDDG TLQDFLFNRF WNELLGLRVD FVSHLMHLRS MRCSPTHLSQ CRNKHKKHWR PFDRSNPPPF MKLGPVGLDD KPDVYIEPEN SFVIEVKASE IVPAGYGIGF TLRFPRCKYI YYDKNSRDYA LDDECLWTVG QGFFYKTRKL IKRTDFMDLF SRPKRSYDDS QGPGNFRGQK LSDADVETSI FSDMTFSDLE ALVHKHGADF TQAQLSDLSA IVISPDQKNP LVRAQIRHGV NVIKPEWVFE SIARRTALPF LKEFLVFASE EAQDGRYYNK TLEQYDKVSF VRDRTGGALV DEDGDADVED EIMDGEDKDE IDVEESRESK NRRMAREDLK EKESNRTLEQ KKLQEAWGLR SRASPGDSDS EPEEEMSLKE ESDTDSERSR GLRAIYEDEE DGENDSHESD VGVNGDDYRA VPLSGLNDKE EGLMGESPEA MHYDEDRIFY HLAFYIDTAK NAAVNGLESS SPSFDTQERL VKVEKLLIEN GGRVARSISD PKLTHIIMDD EDSRRYVELT RKTAMPKRKH IVTPKWVEDC VDEETLLDED LYKPK
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