Gene CNA04270 details

Gene Information

• Locus tag: CNA04270
• ID: 3253370
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Cryptococcus neoformans var. neoformans JEC21
• Kingdom: Eukaryota
• Replicon accession: NC_006670
• Strand: +
• Start bp: 1147503
• End bp: 1151144
• Gene Length: 3642 bp
• Protein Length: 895 aa
• GC content: 51%
• IMG OID: 638252747
• Product: HMG1, putative
• Protein accession: XP_566774
• Protein GI: 58258723
• COG category: [B] Chromatin structure and dynamics
• COG ID: [COG5648] Chromatin-associated proteins containing the HMG domain

Plasmid Coverage information

• Num covering plasmid clones: 21
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GCACGTCCCA TACTCCGTAC CTGCGCCTGC TGACGCACTA CGCGACTGTC CCCGCCATAG 
ATCATAGATC CTGTAGCCTG TAATCTCCCC TGATCATCCA CACGGACCTC GCAATCCGCA 
CCGCTCTTCC GCCACTCCAT CATTCCCGCA TCTGCATCCA CGGCGACCGC GTTGCCCCTT 
CTCTCCCTCA CCGCCCCTCT TCCGCCGTAG CCAAGCGATC TAATCGCGCA TTATCTCATT 
ATCAGTACCT ATCATGTGAG TCCTCTATAT ATCACTTGAC GCGCCTTCTT ACGTCGCGTC 
GCGTATGGCC ATCCTATGTA TGCAGTAACG CTGATGTTTT CTTGATGTAG TGCTGAGCGC 
GTTGCTGCTC CTCGATTAAT ATGCAAAGCA CCAACGCGCC TGTTAACGGT GGTGTTTCCC 
AACAGTGGCA GGTAAGCCTT CCCCTTCATA CCTCGGTCTC TACTGTTGAT CTAATTTTGA 
ATGTAATCGC CGACGTGCTT TTGTTTCCAT TTGGTCTCTT TATTCACTGA TTATGCCTCT 
TTTTTGTCAT GGCCTAATTC ATCACCCTCT CGACGCAGTC GGCCATGCAG GGCATGTACT 
CAGGTGCCCA GCAGAGGCCC ACATCCAATT CGAAGCCCTA TAACGCGCCG GATGCTAATG 
GTATGCCCGC CAAGAAGGAC GATGCGAATC AATCCATGTA CTCTGTCAAC ACAGAAAATG 
GCTATCCCGC GTATCAGCAA CAAGGGTATG GCACGCTTGG AGGCTTAGGA CAATATGGAT 
ACAATAGTGC TGGACTGGGG TGGGTGCCAT GTGACTAAAT CTGGAAGTAA CCTTGTTGAC 
ATGGACGTAC TGCAGCGGCC TGTCAGCAGC ATATGGTGGA GCAACATCAT CAACAGCTGG 
TGCGACCAAT GGACGCAGAA CATCTGGCCA GAGGATGATG ACCCCGCCTC CTCACCCCTC 
TTCAGTTGCA ACAAACACCT CTCCATCTGC TCGATATTAC ACTGGTCAAG AAGGTGAGGC 
AGGCCGTCAT GCTTCGCCCT ATCAGCCCGC TTCCGCACCC CCTCAGATCC TCTCTCATCA 
GTTCAACGCC ATGACCAATT CACCTCAAAC AGCCCAAGGT TACCCCCAAT ATCAGTACAA 
TCAACAGTCG CATCAACAAA ATCCAACCCA ATGGGCGGGA TATCCTACGT ACGGTCAGTC 
ACAGGCCCAA GCTCGTAATA ATATGTCCGG ACGATTGAGC ACGACACCGG CCATCCCACA 
AAACAGTGCG CTGGGCGACA GTTCAGCTCG ACAGCAGCCT ACCTCGATGT ACGATTACAC 
CACCCACGCC CTTCAACAAT GGCCCGCCTC TGATCTGTCA AAGGTGCCGA GCGCTCACCA 
GAACTCATGG CAGAACGCCC AGTCCTTGTC AAGACTGACA CAGGCTCAAT CACCAGCCCT 
TGGTCAAACG CAACCATCAT CCGCTTCTCA ACCCACTTCA TCGACATCAT CCACACAAAA 
TGCGTCACCC GCTGTCCCTC AAAGCGGCTG GCAAGGATAC CCCTCTATCC CTAGCATACC 
TCCGCATACA CTAGGTGGAG GACATTTGAT GAGTGGGCAA CCGTACGGCT GGGGACACAC 
CCAACAATGG GGTGGTTATT ATGGCGCTCA ACAACCATCC CAGGCGCCTC AAGGGACCCC 
GGCTCATCGA CCTCCGTTGA ATAACTTTCC AACTGGCAGC ACCAGCTCTG CGCCTGCAGA 
GTCTCTCCCT ACTGGGCGAA AGAGGATGAG CAAGGATAAA GGCAAAACGG CCAAGGAAAA 
GGAGGAAAAC AGAAGTCATT TCGAAGATTA TCATGGGTTG GGTAAGCGTT CTGCAGAAGC 
CGTGGTTGAG GAGATACCTG GGGAAGATAA GAAAGAGAGC AAGAAGAAGA AGGGTAAGGA 
AGAAAAGGAG AAGCCGGTTC CCAAAGCCAA GTCTCATCTG CATCCACCAA AACAAGCACC 
CTCCTCGTGG CAACTCTTTT TCGCCGATGA ACTTGCCAAA GCCAAAGCAG CTGAACCCGA 
GTCAAGATCC CCAGGCGGTA CTTCACATCC ACAAAAACTT AATGTCGCAC AGATAGCTAA 
AGAGGCTGGC GTGGCATATG CGAACCTCAG TGAGGAAAGG AAAAAATATT ATGCTGAGCG 
CGTCAAGGAG CATAGAGAGA TTTACGCGAA GGAGTTGGCG GCTTGGCAAG CAACACTAAC 
TCCTGAGGAC ATTCGTGCTG AGAACGCGTT CAGAGCCCAG CAAAGGAAAG AAGGAAAGTC 
GCGCAAGGGA AATATCAAAG ATCCGAACGC GCCAAAGAAA CCCCTCAGTG CCTATTTTTT 
ATTTTTGAAG GCTATTAGAG AGAACAGCGA TATCAGAGCT CAAGTTTGGG GAACCGAGGC 
TGAGACTACT AAGCAAAGCG TTATGGCGGC TGAGAAGTGG AGAAGTTTAA CTGATGACGA 
AAAGAGAGTA AGTCGAGTCT GCATGATCAG TCGGCTTCCT ATTCTAACAG GTGCTACAGC 
CTTACCTCGA ACAAGCTGAA CATGATAAGC AAACCTACGA GACTGCTCGT AAGCAGTACG 
AGGAAGATTC TGCTGCTCGC GCTCGAGGTG AAGACGTTCC CATTAGGGCT GTGGAAGCAC 
CCGCTTCGCC GCCTAAGCCT CCTGCATCTA TCTTGAGATC TATCCACGGA GGACAAGCAC 
CGGTTACCAA GTCATCACCT TCTGTGACAG ATTCTGCACC TCATCCTGCG CCTCATTCAG 
ACCTCGAACC AGGCATCACC TCTCTGGGCA AGTCACCCTC ACCCAACCCT CCCTCTGAAC 
CTAGTCTTGC CCAGTTTCAC ACTTCACCTC GCTCTGTCCC TCATTATGAC CCCTCACTCG 
AGGTGGATGA TTTCCAAGGA TTCTCTGATC CTCTTAACAT GGATCTGTCG GGTTTGGACG 
GCATAGATGT TGGGTCTATG GAAGTAGGTG CTGGTGGCGA TAGTGAACAA CCGTGGGATG 
AGCTGCAAAA GCTCATAGGC ACAGAAGATG TGTATAGTTC AGCAAAGCTT CAGCCTGCAG 
CGCATATCGT ACCTGACGCT TCAACCGCAG CAAGAGTCGC CCCTGCTTCT GGATTTGAAA 
GCACTGACAT TTCAGTTGCG CCATCCTATG CTGAAGCTAA GAACGAGACA CAGCAAGAGA 
CTTCCTTGAA TGGGACCCCT GAGGGGAACG GGAATGAGTC AAAGGTACGC CATATTGCAG 
AGGCAGCGGA GGGCGAGTTG GCTGTGCTTC CAGCTCTAGG CGAAAATACC GCCCAGAAGA 
ACCAAGGGGG TTTAGAGGTC ATGGTTGGAG CAGGGGAAGC CCGAAGACAT AATAAAAACT 
TGTCAACTGA ATCAGGACAG GCGGCTGCCG ACGCTCCAGT GGTTGATGGG GTGTAAAATG 
GGGCTTTGTG GTTTATAATA TAATATGTAG TGAAGGTTTT GCGTGGACCA GTACGTAGAA 
CAAACACATT AGCTTATTAA TCTTACTTTG AACATAGTCA TATATTCATA TCAGATTCAA 
CATCCTTGCT ATACGCGAAT AGGAGCATAC ATTGATATAT TGTAGTTTTA TCTTATTAAT 
CTTGCTTTCC AACACGTAGT ACATCCATCT GTATTATTGT AA 

 

Protein sequence

MQSTNAPVNG GVSQQWQSAM QGMYSGAQQR PTSNSKPYNA PDANGMPAKK DDANQSMYSV 
NTENGYPAYQ QQGYGTLGGL GQYGYNSAGL GGLSAAYGGA TSSTAGATNG RRTSGQRMMT 
PPPHPSSVAT NTSPSARYYT GQEGEAGRHA SPYQPASAPP QILSHQFNAM TNSPQTAQGY 
PQYQYNQQSH QQNPTQWAGY PTYARQQPTS MYDYTTHALQ QWPASDLSKV PSAHQNSWQN 
AQSLSRLTQA QSPALGQTQP SSASQPTSST SSTQNASPAV PQSGWQGYPS IPSIPPHTLG 
GGHLMSGQPY GWGHTQQWGG YYGAQQPSQA PQGTPAHRPP LNNFPTGSTS SAPAESLPTG 
RKRMSKDKGK TAKEKEENRS HFEDYHGLGK RSAEAVVEEI PGEDKKESKK KKGKEEKEKP 
VPKAKSHLHP PKQAPSSWQL FFADELAKAK AAEPESRSPG GTSHPQKLNV AQIAKEAGVA 
YANLSEERKK YYAERVKEHR EIYAKELAAW QATLTPEDIR AENAFRAQQR KEGKSRKGNI 
KDPNAPKKPL SAYFLFLKAI RENSDIRAQV WGTEAETTKQ SVMAAEKWRS LTDDEKRPYL 
EQAEHDKQTY ETARKQYEED SAARARGEDV PIRAVEAPAS PPKPPASILR SIHGGQAPVT 
KSSPSVTDSA PHPAPHSDLE PGITSLGKSP SPNPPSEPSL AQFHTSPRSV PHYDPSLEVD 
DFQGFSDPLN MDLSGLDGID VGSMEVGAGG DSEQPWDELQ KLIGTEDVYS SAKLQPAAHI 
VPDASTAARV APASGFESTD ISVAPSYAEA KNETQQETSL NGTPEGNGNE SKVRHIAEAA 
EGELAVLPAL GENTAQKNQG GLEVMVGAGE ARRHNKNLST ESGQAAADAP VVDGV