| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_5541 |
|---|
| Symbol | cdsA-2 |
|---|
| ID | 1187233 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 6309485 |
|---|
| End bp | 6310414 |
|---|
| Gene Length | 930 bp |
|---|
| Protein Length | 309 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637396860 |
|---|
| Product | phosphatidate cytidylyltransferase |
|---|
| Protein accession | NP_795265 |
|---|
| Protein GI | 28872646 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4589] Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATAACC AGACTCAACT GTTGTTCATG GGCATCGGCA TCGTTCTGCT GCTCGCCTCG
CTGATCGGCT ATGTGCTCAA GCGCAGGGCT GGCGGACCCA ACTCGGTTAT CGACAACCTC
AACGCGCGCA TCAATGCCTG GTGGGTGATG GTGCTGGTGA TCGGCTTCGC CTTCTGGCTG
GGTCAGGGCG CGGTCATCCT GCTGTTCTAC GCTGTTTCGT TCTACGCCCT GCGCGAGTTC
CTGACCCTGA CGCCGACCCG GCGCAGCGAT TACCCGGCCT TGGTGGCGGC GTTTTACCTG
GCGCTGCCGT TGCAGTACGT GCTGATTGCG ATTAACTGGT ACGGGCTGTT CTCGATCTTC
ATTCCGGTCT ATGTGTTCCT GCTGCTGCCG ATTCTGGCCT CGCTGGGCGG CGACAGTAAG
CACTTCCTGG AGCGCGCCTC GAAAGTGCAG TGGGGCTTGA TGATCGCGGT GTTCTGCGTC
TCCTACGTGC CCGCCCTGCT GACCCTGGAG ATCGCCGGCT ACGAGGGCCG CAACCTGTTG
CTGATCGCCT GGCTGGTGAT CGTGGTGCAG ATCTCCGATG TGCTGCAATA CGTGTGCGGC
AAGTTGTTCG GCAAACGCAA GATCGCGCCC AACCTGTCGC CATCGAAGAC CGTCGAAGGC
TTTCTGGGCG GCATCGCCCT CGCCTCGTTG ATTGGCGGCG CGCTGTGGTG GATAACCCCG
TTCAATGCCT GGCAGGGCGT CCTGATCGCA CTGCTGATCA ACCTGCTGGG GTTTGCAGGG
GGCATTGTCA TGTCCGCCAT CAAGCGTGAC CGCGGCGTGA AAGACTGGGG CCACATGATC
GAAGGCCACG GCGGCATGCT TGATCGGCTG GACTCGGTCT GTTTTGCCGC GCCGATTTTC
TTCCATCTGG TGCGTTACTG GTGGACCTGA
|
|---|
| Protein sequence | MDNQTQLLFM GIGIVLLLAS LIGYVLKRRA GGPNSVIDNL NARINAWWVM VLVIGFAFWL
GQGAVILLFY AVSFYALREF LTLTPTRRSD YPALVAAFYL ALPLQYVLIA INWYGLFSIF
IPVYVFLLLP ILASLGGDSK HFLERASKVQ WGLMIAVFCV SYVPALLTLE IAGYEGRNLL
LIAWLVIVVQ ISDVLQYVCG KLFGKRKIAP NLSPSKTVEG FLGGIALASL IGGALWWITP
FNAWQGVLIA LLINLLGFAG GIVMSAIKRD RGVKDWGHMI EGHGGMLDRL DSVCFAAPIF
FHLVRYWWT
|
|---|
| |