| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_5488 |
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| Symbol | |
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| ID | 1187180 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 6254628 |
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| End bp | 6255965 |
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| Gene Length | 1338 bp |
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| Protein Length | 445 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637396807 |
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| Product | major facilitator family transporter |
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| Protein accession | NP_795212 |
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| Protein GI | 28872593 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGCTGTCGC TTGCCCCCTT CGAAGAACAA GTAAAGAGAA GCCTTGTCAT GTCATCTGTT
CCCTCAAGTT CCACGCAGCC TGCGCGGCCG TTGACTCGCA GCGATTACAA AACCCTGTCG
CTGTCCGCTC TGGGTGGTGC CCTGGAGTTC TACGACTTCA TCATCTTCGT GTTTTTCGCG
GCCGTGGTTG GAAAGCTGTT TTTCCCGGTC GATATGCCTG ACTGGCTGCG CATGATGCAG
ACCTTCGGCA TTTTCGCCGC CGGTTATCTG GCAAGACCGC TAGGCTGCAT TATCATGGCG
CACTTCGGCG ATCTGCTGGG GCGCAAGAAA ATGTTCACCC TGAGCATTTT CATGATGGCG
GTGCCGACGC TGATCATGGG CCTGTTGCCC ACTTATGCGC AGATTGGCAT GTGGGCACCC
ATTCTGCTGC TGGTGATGCG GGTCATTCAG GGCGCGGCCA TTGGCGGCGA AGTGCCGGGG
GCGTGGGTGT TCGTGTCCGA GCATGTACCT GCACGTCGCG TCGGTTATGC CTGCGGCACA
CTGACGGCTG GCCTGACTGC CGGTATTTTG CTGGGCTCGC TGGTTGCCAC GGCGATCAAC
AGCATTTATA CACCGGTTGA AGTGTCGGAC TACGCCTGGC GGATTCCTTT CCTGCTGGGC
GGCGTGTTCG GTCTGATGTC GGTGTACCTG CGTCGCCTGC TACACGAGAC CCCGGTGTTT
GCCGAGCTGC AACTGCGTAA GGCTCTGGCA GAAGAAGTGC CACTCAAGGC GGTGTTGCGT
GATCATCGCG GTGCCGTTGC GCTGTCGATG TTGATGACCT GGTTGCTGTC GGCGGGCATC
ATTGTCGTGA TCCTGATGAC GCCTACCATC CTGCAGACTA TCTACGGCTT CCCGGCGGCC
ACGGCGTTGA AGGCCAACAG CCTGGCCATC GTGTTCCTCA GTGTGGGCTG CATCGCTGCC
GGTGCGCTGG CGGATCGTTT CGGTGCAGGC TGGGTATTTC TGCTGGGCAG TGCCGGTCTG
CTGGTCAGTT CCTGGACGTT TTATCACGTC CTCGGCAGCC ACCCGGAGGT GCTGTTCCCG
CTCTATGCAA TCACCGGGCT GTTCGTCGGC ACCATCGGCG CGGTGCCTTA CGTCATGGTC
AAAGCCTTCC CGCCGGTGGT GCGCTTTTCC GGGCTGTCGT TTTCCTACAA CCTGGCGTAC
GCCATTTTCG GCGGTCTGAC GCCGATGGTG GTGACCTTCA TGCTCAAGAG CAGCCCGATG
GGGCCGTCCT GGTATGTCGC GATTCTCTGC GGCCTGGGCA TGGCAATCGG TGTGTTCCTG
CTGACCAGGA AGCGTTGA
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| Protein sequence | MLSLAPFEEQ VKRSLVMSSV PSSSTQPARP LTRSDYKTLS LSALGGALEF YDFIIFVFFA
AVVGKLFFPV DMPDWLRMMQ TFGIFAAGYL ARPLGCIIMA HFGDLLGRKK MFTLSIFMMA
VPTLIMGLLP TYAQIGMWAP ILLLVMRVIQ GAAIGGEVPG AWVFVSEHVP ARRVGYACGT
LTAGLTAGIL LGSLVATAIN SIYTPVEVSD YAWRIPFLLG GVFGLMSVYL RRLLHETPVF
AELQLRKALA EEVPLKAVLR DHRGAVALSM LMTWLLSAGI IVVILMTPTI LQTIYGFPAA
TALKANSLAI VFLSVGCIAA GALADRFGAG WVFLLGSAGL LVSSWTFYHV LGSHPEVLFP
LYAITGLFVG TIGAVPYVMV KAFPPVVRFS GLSFSYNLAY AIFGGLTPMV VTFMLKSSPM
GPSWYVAILC GLGMAIGVFL LTRKR
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