Gene PSPTO_5376 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_5376 
Symbol 
ID1187063 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand- 
Start bp6108448 
End bp6109113 
Gene Length666 bp 
Protein Length221 aa 
Translation table11 
GC content59% 
IMG OID637396693 
Producttranscriptional regulator, GntR family 
Protein accessionNP_795103 
Protein GI28872484 
COG category[K] Transcription 
COG ID[COG1802] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones9 
Plasmid unclonability p-value0.0423654 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACGACG CCTCTCCCAC CCTTCCCCGA ACACTGGGAG AAACCATCAC CCGAGAAATA 
CGCAGAATGC TGGTCGAGGG AGAACTCGTG CCCGGCCAAC GCCTTTCAGA AGCCGCACTG 
GCAGAAAACC TCGCCATTTC GCGCAACACC TTGAGAGAGG CATTTCGGGT TCTGACGCGC 
GAAGGCCTGC TCAAACACGA ACCTAACCGC GGAGTGACGG TTGCAGAACC CGACATGGCC 
TCGATCATCG ACATCTACCG AGTGCGCCGC TTCATCGAGT GCAAGGCCAT CGCCCAAGCC 
TACCCCCAGC ACCCAGGCAC CCTGCACATG CGTGAGGCTG TCGAATCAGG CGTGCACGCG 
CGCGAATCGA AAGACTGGGT AGCGGTCGGC ACGGCCAACA TGATTTTTCA CAACTCAATC 
GTCGAACTGG CAGATAGCCC ACGCCTGCTG GTGTTTTACG GGCAGATCTC GGCTGAATTG 
CGGCTGGCCT TCGGGTTGCT CAACGACCCC CGATTACTGC ACTTGCCGTT CCTCGATATG 
AACGCATCGA TACTTCAATG CGTTGAAGAA GGCCGAGCGG GCGACGCGAC GATCATGCTG 
GATGCCTACC TGGTGCAATC TGAGCGAACT GTCCTGGCCG CTTACGAGCG CAGCATGAAA 
CGGTAG
 
Protein sequence
MNDASPTLPR TLGETITREI RRMLVEGELV PGQRLSEAAL AENLAISRNT LREAFRVLTR 
EGLLKHEPNR GVTVAEPDMA SIIDIYRVRR FIECKAIAQA YPQHPGTLHM REAVESGVHA 
RESKDWVAVG TANMIFHNSI VELADSPRLL VFYGQISAEL RLAFGLLNDP RLLHLPFLDM 
NASILQCVEE GRAGDATIML DAYLVQSERT VLAAYERSMK R