| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_5358 |
|---|
| Symbol | |
|---|
| ID | 1187044 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 6090746 |
|---|
| End bp | 6091510 |
|---|
| Gene Length | 765 bp |
|---|
| Protein Length | 254 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 637396677 |
|---|
| Product | amino acid ABC transporter, periplasmic amino acid-binding protein |
|---|
| Protein accession | NP_795088 |
|---|
| Protein GI | 28872469 |
|---|
| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGACGT ATAAGAAGAT CTTGCTGGTT GCGGCGGCCA CGCTGGCGTT TAGCAGCGGT
GCCTTTGCCG AAAAGCTGAA AATGGGTATT GAAGGGGCTT ATCCGCCGTT CAATAACAAG
GATGCGAGCG GCCAGGTGGT CGGCTTCGAC TATGAAATCG GGCAGGCCCT GTGCGCCAAG
ATGAAAGTCG AATGCGAAGT GGTGACCTCC GACTGGGACG GCATCATCCC GGCGCTCAAC
GCGCAGAAGT TCGACTTCCT GATCTCGTCG CTGTCGATCA CCGACGAGCG CAAGCAGGTG
GTTGATTTCA CCGATCCGTA CTACTCGAAC AAGCTGCAGT TTCTGGCGCC GAAGACATCC
TCCATTGACG TTTCGTCCAT TGAAAAAGCC AAGGAAAGCC TGACTGGCAA ATCAGTGGGC
GCACAGCGCT CGACACTGGC CGCCACCTGG CTGGAAGACA AACTCGAGAT CATGGACGCC
AAGCTCTACG ACACTCAGGA AAACGCTTTT CTTGATCTGC TCTCCGGTCG CGTTGACGCC
ATGCTGGCCG ACAAGTACGT CAGCTACGAG TGGCTGAAAA GCGAGGCCGG GCAAAACTTC
GAGTTCAAGG GCGAGCCTGT TGTGGAAAAC GACAAGATCG GTATCGCCGT GCGCAAAGGC
GACGACCCGT TGCGCGAGCG TCTGAACGTT GCCCTGAAAG AAGTCATCGC TGACGGCACC
TATAAAAAGA TCAACGACAA GTATTTCCCT TTCAGCATTC TCTGA
|
|---|
| Protein sequence | MKTYKKILLV AAATLAFSSG AFAEKLKMGI EGAYPPFNNK DASGQVVGFD YEIGQALCAK
MKVECEVVTS DWDGIIPALN AQKFDFLISS LSITDERKQV VDFTDPYYSN KLQFLAPKTS
SIDVSSIEKA KESLTGKSVG AQRSTLAATW LEDKLEIMDA KLYDTQENAF LDLLSGRVDA
MLADKYVSYE WLKSEAGQNF EFKGEPVVEN DKIGIAVRKG DDPLRERLNV ALKEVIADGT
YKKINDKYFP FSIL
|
|---|
| |