| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_5119 |
|---|
| Symbol | |
|---|
| ID | 1186804 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 5820666 |
|---|
| End bp | 5823896 |
|---|
| Gene Length | 3231 bp |
|---|
| Protein Length | 1076 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 637396439 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | NP_794851 |
|---|
| Protein GI | 28872232 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGCAAGC TTGCCCGATC CAACGAACAG AAAGCGCTCG GACCTGACCG CTTCAGCCCC
AGTACGGTTG CAGTGCGTGA ACACCGGGCA CGTGAGCGCG CAGACCGAAT GATCGACCAG
TTGGTCGAGC GCTTCACGGA AAAGAATTAT TTCCCTGACG ATGGCGAGAG TGCCTTGTTC
GCCTTGCTGG TTCAGTTGCC GGAATGGCCT GCTGAACTGA TGATCAGTGT TCAAAACGAA
AACGGTGAAG ACCTTGCGTT GTACCTGAAA GGCAACGACC AAAGCGTTGT CGAAAACACC
GTCGTGCTGA TGCATGACAG TGACGATGCT TATGTCGCAC CCGACGGTGT TTCTATCTCC
GATGACGAGC CCCTGTTGAA TCTTGTCTTC AGCCAATTGC CTGTCAGCTC AAGGCTCGGC
ATGGGCGGAA ACTTTCCGGG CAACAACAGT ACAGCCGGCC GAATCGTCAC CCTGCGCGAA
CAGATAGCAG GATTGGCCAG GGAACAGCGG CCGCTGTTGT TCGCGGCCTT GCTGGCCGAT
GAGGGGACTT GCAAAAGCCT GTTGAATGTT CGTCTGCCCA ATCCCTTCCT GCCACTTTGG
GATCGTAGGG ACATCGAAAT CTCGCCGGTT CTGGGCTGGT TGGGGGCCTT GAATCCGCAG
GTTCCTGTCA GCCGTCTCGG AGAGCTGCTG GAGCGGGTGC CACTGACCGA AGAACAGCAA
ATCGACTTTT TGAAAAATGA TGTTCTCCCG GATAAATTCG TTGAAGCGAT GGAAATTTCG
CTGGATGAAT GGACGCGCAG CACGGCGATT GATGGCCTGT CGCGCACGCG GATCTTCAAT
CAGTACACCG ATGAACTGGC TCGCACCGGA GCGCGGGCGC TGCTGGCTGC TTCAGAGCAG
AATCTGGTGA TCGTTGACCC CGGCATGAGC AAGTACGAGC CTGCGGGACC TGACGAGACC
AGTATCGTGT TGTTGCACGA TGGCGCCGGT AATTACAGTG CTCAGGATAT AAGCAATGGT
GAGATAACTG AGTTCAAGGA CGGCACCGAC AGTTTTTATC TGGCAATCAG TTCGCAATTG
AAGGCTGAGG ATCGTTTGTC GCTGGGCATG CAGTTCGAGC AGGATGTAGC GGGGTTTCGC
AAGGCTTTGA CCCAGCGCGC AATCGAAGAA AACCGAGGCT GGTTCGATCC CGAAAAACCG
ACCGGAATTG AAAAGGAGTT TTTGCCCGAG TGGTTCGCGA GCGCGTCCGA TGACGACAAG
TATGCGTGGA AGATCGCCGT ACAGGATTAC AGTCAGGCGG TGCTCGAAGC CCAGGCTCCT
GATCTGCTTG AACCTTCCAG GTACGGAGAG CCTGATCAGC TTCGTAACTA TGCTCGCGAG
AAGCTGCAGG AGCGAATCCT GCTGGATCAT GGTGTAGAGG TTAATCCTGA CGAGATCAGC
ATCCTTACCG TGAGTATTGA AATCGATCCG GGCTTTATCC TGGATCTGGA TTATGAGTTT
GCAGGCCCTT CGGAGGTCGA GGCTAACTAC GAAACGCAGC AACGCAGCCT CACGGACTTG
TCCCTGGAAA ATATCGCTGT TACCGATCTC AACTTTTTGT GGACCAGTCG CGCGTTAGAT
GCTCAGGGGC AATTGATCGG TTTTCTCAAG GCTGGTTATC TGTTCAGTCT GATCCGTGAT
CTGAACATTG GTGAAAATTA CCCCAGGTTC CTGAGAAACG TATTGTCGAC CTCGTCTACC
GGCGCATGGC ACCGCCAACG CTATGCACGC GTGATGCATA CGCAGATGCG CCTCGACGGG
ATCGAGGCAA AGATGGCAGG CGACTTTCTG GGCGACGGAA GTCTTCCCCC CGAGCTGGCG
AACCGAGGTC ACAAGTGGCT GACAGCCGTG CTGGACCACC CTGTCGACGA TGATGACCGT
GCAACTGTCG AGGGGCATCG CATTCAGGTC AGTCAGTTGT CCATTAACGG TGTGCCCTTG
AGCGGCGTAC TGGCGATCGG GGTTGAGGCA CGTTCCAGCG TCGGCACCCT GGTGATGTTT
ACTCCGCAGG CACCTGACGG TAAATGTTTT CGGGAAATGA GCAGCATGAC CGAGTTTCAG
CAACTGTTGC TTGAGCCTGC ATTACTGGAC TATCTGGTGG GCAGGGCAGC GCTCCCCTAT
CAGGCCGATG TGCGGCGGGC ATTGACCGCT GACCGGGATG CGCTGTTCAT TGACTTGCTG
CCCCGCAGCG AAAACTTTCT TGAAGCGGTG TATGACTCCG AAGTCGAACG GGTGATATCG
GCTGTTGATG AGCAGACCAA TAGTAATTGG GAAACCAACT GGCGAAGTGC TTGGGAGATC
ACCCAAGCCG TTGGCGACAT CATCCTCACC TTCGTGCCCT TTAAAGTGCA GCTCCCGATC
GCCGCTCTTC GCAGTTTCTA CGCCATCTGG CAGGGCATTG GAAAGGTGGC CAGCGAACAA
GGCAGTGCGC CGTTGTATTT CGCTCAGGCT GCGCTGTTGC TGGCCGATGG GCTGACGCTG
CCCAAAGGGC GGCGGGTTAA ACCGTATTCT CCGGCGGCGG TTGGCCGCTC TGTTCTCAAT
CCGAAAACAG CCGTATCAAA AACGCCCGGC GGGTTGACGG CGCGCGGCGA CGGTATTTAT
CGGGGCATCC ATGAGAAAGT TCAGGAGGGT GTGCCGAGTC GCTTTTACGC TATACAACAG
GAAAAAGCCT ATGCCGTCAG GTATGACGCT GATTCCGCTG TATGGCGAGT GATTGATTCG
CGGCGACCGG ATGCCTATTA CCAACTACCG ATCCAGTTGG ACGGTCAAGG CGTCTGGGTG
CACGCGCCGG TCGGTTTGCG TGGTGGCGGC AAACATACGG TGCCGAAACT TCCACGCGAG
GAGGCTCAGG TCAATAAAGC TCGCCCGTCT GGGTACAAGA TATTCATGGG TGAGTTTTTC
ACCAGCAGCA AGTTTACAAA GGCGCAGGGT AAAATACAGG AAGATATCGA AGGCGGCCTT
AAAAGCGCAG TCAATCGTGC AGTTGCCAAG TACGTCGAAG ATGGCGCTGG TAGCCTGCAT
GCGTGGAAAC ACAATGGAAA ATTCAATATA CCCAGGGACG TACAGATGTT TACTCTGGAT
CTGACTACCG TCGGTAACAG TACCGGGAGA GGGGACTGGC GTCTGATCCT CCAACAGGGG
AAGGGCTTGC TTAAGCCTTG GAACATCCTG AATCATAAGG ATTTGAAATA G
|
|---|
| Protein sequence | MGKLARSNEQ KALGPDRFSP STVAVREHRA RERADRMIDQ LVERFTEKNY FPDDGESALF
ALLVQLPEWP AELMISVQNE NGEDLALYLK GNDQSVVENT VVLMHDSDDA YVAPDGVSIS
DDEPLLNLVF SQLPVSSRLG MGGNFPGNNS TAGRIVTLRE QIAGLAREQR PLLFAALLAD
EGTCKSLLNV RLPNPFLPLW DRRDIEISPV LGWLGALNPQ VPVSRLGELL ERVPLTEEQQ
IDFLKNDVLP DKFVEAMEIS LDEWTRSTAI DGLSRTRIFN QYTDELARTG ARALLAASEQ
NLVIVDPGMS KYEPAGPDET SIVLLHDGAG NYSAQDISNG EITEFKDGTD SFYLAISSQL
KAEDRLSLGM QFEQDVAGFR KALTQRAIEE NRGWFDPEKP TGIEKEFLPE WFASASDDDK
YAWKIAVQDY SQAVLEAQAP DLLEPSRYGE PDQLRNYARE KLQERILLDH GVEVNPDEIS
ILTVSIEIDP GFILDLDYEF AGPSEVEANY ETQQRSLTDL SLENIAVTDL NFLWTSRALD
AQGQLIGFLK AGYLFSLIRD LNIGENYPRF LRNVLSTSST GAWHRQRYAR VMHTQMRLDG
IEAKMAGDFL GDGSLPPELA NRGHKWLTAV LDHPVDDDDR ATVEGHRIQV SQLSINGVPL
SGVLAIGVEA RSSVGTLVMF TPQAPDGKCF REMSSMTEFQ QLLLEPALLD YLVGRAALPY
QADVRRALTA DRDALFIDLL PRSENFLEAV YDSEVERVIS AVDEQTNSNW ETNWRSAWEI
TQAVGDIILT FVPFKVQLPI AALRSFYAIW QGIGKVASEQ GSAPLYFAQA ALLLADGLTL
PKGRRVKPYS PAAVGRSVLN PKTAVSKTPG GLTARGDGIY RGIHEKVQEG VPSRFYAIQQ
EKAYAVRYDA DSAVWRVIDS RRPDAYYQLP IQLDGQGVWV HAPVGLRGGG KHTVPKLPRE
EAQVNKARPS GYKIFMGEFF TSSKFTKAQG KIQEDIEGGL KSAVNRAVAK YVEDGAGSLH
AWKHNGKFNI PRDVQMFTLD LTTVGNSTGR GDWRLILQQG KGLLKPWNIL NHKDLK
|
|---|
| |