Gene PSPTO_5100 details

Gene Information

• Locus tag: PSPTO_5100
• ID: 1186785
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: +
• Start bp: 5800533
• End bp: 5800958
• Gene Length: 426 bp
• Protein Length: 141 aa
• Translation table: 11
• GC content: 57%
• IMG OID: 637396420
• Product: 4-hydroxybenzoyl-CoA thioesterase domain protein
• Protein accession: NP_794832
• Protein GI: 28872213
• COG category: [R] General function prediction only
• COG ID: [COG0824] Predicted thioesterase
• TIGRFAM ID: [TIGR00051] acyl-CoA thioester hydrolase, YbgC/YbaW family

Plasmid Coverage information

• Num covering plasmid clones: 23
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCGCAGTA AGGGTTTTCT GCACCTGGAC ACTGAAATCG TGGTGCCGTT TTTCGACGTC 
GACATGATGA ACATCGTCTG GCACGGGCAT TACGTCAAAT ACCTGGAAGT GGCGCGTTGC 
GCGCTGCTCG ACCACATTGG CCATAACTAC ATGCAAATGC TCGAATCCGG TTATGGTTGG 
CCGGTGATCG ACCTGCAATT GCGCTATGTG CGCAGTGCCG TGTTCGGCCA GAAGCTTAAC 
GTGCGCGCCA GTCTGGTGGA GTGGGAGAAC CGCTTGAAAA TCAACTATCT GATCACCGAC 
GCCGACACCG GCGAGCGCCT GACCCGTGCC AGCACCGTGC AGGTCGCAGT TGACCGCGAC 
AGCCACGAAA TGCAACTGGC CTCGCCCCAG GTCTTTATCG ATGCCGTAAA GAGAGCGTTG 
CCATGA 

 

Protein sequence

MRSKGFLHLD TEIVVPFFDV DMMNIVWHGH YVKYLEVARC ALLDHIGHNY MQMLESGYGW 
PVIDLQLRYV RSAVFGQKLN VRASLVEWEN RLKINYLITD ADTGERLTRA STVQVAVDRD 
SHEMQLASPQ VFIDAVKRAL P