| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4958 |
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| Symbol | |
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| ID | 1186643 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 5621051 |
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| End bp | 5622592 |
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| Gene Length | 1542 bp |
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| Protein Length | 513 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637396279 |
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| Product | HAMP domain protein |
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| Protein accession | NP_794691 |
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| Protein GI | 28872072 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3726] Uncharacterized membrane protein affecting hemolysin expression |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAACCGGC CCACGCCTGT TAAAACCGAT AATTTCTTCC TGCTCATCTT TCGTGCCCTG
CGTCATCGCC GTGTACCGAT CGCTTTGCGC ATTGCCAGCC ATAACGTGAT CCTGGTCGCT
TTGGCGCTGG TGATCTACGC CGGTGTCATG GGCCTGCAGT TCAAGCAGGC CATGCACGAA
CAGGCGGATG CGCTGGGGCA GGCCCTGACG ACCCAGACCG CCACCTCGGC TACCGAGCTG
TTGGTGTCCA ACGACATCCT CAGTCTCAAC GTGCTGCTGG GCAATCTGGT CAAAAACCCG
CTGGTAGCGC ATGCCGCTAT CTACAGTGTG GATAACCGCA TTCTGGCGGA AGCCGGCCAG
CGCCCGAAAA ACGGGCTTCT GGGCGAGGCG CAGGGCCTGT ATGAAATCAA GATCACGTTC
CAGGACGTGA TGGCGGGTCA TCTGCGCATC AGCCTCGACA TGTCGCAGTT CCAGCAACCG
ATGACCATCA GCCTGCAGAG CATGGGCATT CTGGCGGGCA TCCTGCTGGC GCTGGCGCTG
GCCCTGAGCC TGCGCCTCGG TCGCCATATC TCCACCCCGC TGATGCAAAT GCGCATCTGG
CTGCGCGATA TCGACCCGTA TACGCCAGCC ACAGACCGTC AGGATGAAAT CGGCGATCTG
GCCCGGCAAC TGCGCACCTC GTTCGCACCG CCAGTGCCGG AGCCAGAACC GCTGCCCGAG
CCTGAATATG AAGGCGACGA AGACGAAGGC GAGGATCCCT ACCTGGAGCC GGAAGAAAAG
CCTGCCCCAC CCACCTCTGC ACGCGCCAGC GAAGCAAAAC CTCGCCTGCC GGCGCCGCCC
GTCCAGCGTC GCATCGTCGC AGAAGAAGAT GAGGATGATG ACGAAGACCC GTTCGCGGAC
CTGCGTGACA CCTCAGGCAG CACACCCGTT GCGCGCCCTG CTGCATCGCC TGTCGCTCAA
CAAGAGCCGC ACAACAGTGC CGTGCTGGCT GTTCAGCTGG GCGCACAGGA TCAGTTACGC
CGTCTGCCGC GCGCACGCTT GACCGAACTG CTGCAGCGCT ATCGCGACTG TGTCGATCAG
GCCGCCTCGG TGTACGAAGG CGAGCTGCAC ACGCTGAACG ACGGCAGCAC GCTGATGCTG
TTCCACAGCC ACGAAAGCGG TGACGACTAC CTGACCAACG CCATTTGCTG CGGCGAGTTG
CTGCGCGCGC TAAGCCACGC CTTGCAGATC GAAGTGGCCG ACAGCGGTAT TACCTTGCAA
CTGCAACTGG GCCTGACCCT GGGTGAGAAC CTCAGCGGCC TGAGCCAGAT AGACCTGTTG
CTGACTGAAA CGGCGCAGGA CGCCTTGGCG TTGTCTCAGC ACAGCCGCAA CCTGCTGCTG
GTCGAGCGGC GAATCAACGA TGACCCGCTG ATCCGCCAGC GCGCCCGCAT CCGCCCCATC
GCAAGCCCGG AAGGTGCCTG CTGTGTGGAG CGTCTGATGG AGCCCTACCC GTCCATGCTC
GAACGCCAAC TGTCGCGCAT GCACGAATCC AACAAAGGCT GA
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| Protein sequence | MNRPTPVKTD NFFLLIFRAL RHRRVPIALR IASHNVILVA LALVIYAGVM GLQFKQAMHE
QADALGQALT TQTATSATEL LVSNDILSLN VLLGNLVKNP LVAHAAIYSV DNRILAEAGQ
RPKNGLLGEA QGLYEIKITF QDVMAGHLRI SLDMSQFQQP MTISLQSMGI LAGILLALAL
ALSLRLGRHI STPLMQMRIW LRDIDPYTPA TDRQDEIGDL ARQLRTSFAP PVPEPEPLPE
PEYEGDEDEG EDPYLEPEEK PAPPTSARAS EAKPRLPAPP VQRRIVAEED EDDDEDPFAD
LRDTSGSTPV ARPAASPVAQ QEPHNSAVLA VQLGAQDQLR RLPRARLTEL LQRYRDCVDQ
AASVYEGELH TLNDGSTLML FHSHESGDDY LTNAICCGEL LRALSHALQI EVADSGITLQ
LQLGLTLGEN LSGLSQIDLL LTETAQDALA LSQHSRNLLL VERRINDDPL IRQRARIRPI
ASPEGACCVE RLMEPYPSML ERQLSRMHES NKG
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