Gene PSPTO_4947 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_4947 
Symbol 
ID1186632 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp5606929 
End bp5608419 
Gene Length1491 bp 
Protein Length496 aa 
Translation table11 
GC content66% 
IMG OID637396268 
ProductYjeF-related protein 
Protein accessionNP_794680 
Protein GI28872061 
COG category[G] Carbohydrate transport and metabolism
[S] Function unknown 
COG ID[COG0062] Uncharacterized conserved protein
[COG0063] Predicted sugar kinase 
TIGRFAM ID[TIGR00196] yjeF C-terminal region, hydroxyethylthiazole kinase-related
[TIGR00197] yjeF N-terminal region 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTCGACA CTAAACCTCA TTTACCCGAC GCGCTGTACA GTGCGGCGCA GGTCCGCGAC 
CTTGATGCCC GGCTGATTGC CGCCGGTACG CCAGGCCTGG AATTGATGCA GCGTGCAGCC
CACGCCACGT GGCGCGCGAT ACGCAGGCGC TGGCCCGAGG CGAACCAACT GACGGTGCTG
GCCGGACGTG GCAACAATGC CGGCGACGGT TATCTGGTGG CCGCGCTGGC GCACAAGGCG
GGCTGGCAGG TCAACGTGCT GGCTGTCAGT GATCCGGCTG GGCTGACAGG CGATGCAGCG
TCCGCGCACG CCGCGGCTTC GGGTATTGAC ACGCAAGCCT GGGGCGGGCA GCCGCTGGCC
GGAGTGGTGC TGGATGCCCT GCTTGGCACT GGGCTCAACG GCGAGGTGCG CGAGCCCTTC
CTTTCGGCCA TTAACGCGAT CAATGCCAGC GGGCTGCCGG TTGCAGCCGT GGACATTCCC
TCGGGCCTGA GCGCCGACAC CGGGCATAAA TCGGGTGCGA CAGTACGCGC CGACCTGACC
GTCACCTTCA TAGGCCTCAA GCTGGGGCTG CTGACCGGCG ATGCGGCAGA TCTGGTCGGC
GAGCTGGTTT TTGACGATTT GCAGGCCGAT CCGGCACTGG TTGCGCAGAC GCCCGCCAGC
GCCAAGCGTC TCGATGCGCA CAACCTTCCT TATCTGGCAC CGCGTCCGCG CACAGCCCAT
AAAGGTCTGT TCGGGCGCGT GCTGGTTATC GGTGGCGATC ACGGCTTTGG CGGTGCGGCG
TTGCTCTGCG CTGAAAGTGC CCTGCGCAGC GGTGCGGGCA TGCTCACGCT GGCGACCCGC
GCCGAGCATG TTCCGGCAGC CCTGACACGC ATGCCGGAAA TCATGAGCGC GGCCATTCGC
TCGGCAAACC AGTTGATGGC GTTGATCGAG CCGGCCAGCG TGCTGGTGGT CGGGCCTGGC
ATGGGGCAGG GCAGTTGGGG GCGCAGCCTG TTGTCGGCTG CCGCCAACGC CGACCGGCCG
CAGGTCTGGG ACGCCGATGC GCTGAATATG CTGGCGGCCG GGCAGGTGAG CCTGCCGAAA
AACAGCGTCA TCACTCCGCA TCCGGGCGAA GCCGCGCGTT TGCTGGGTGT CGGTATCAAG
GACATTCAGG CCGATCGCCC TGCCGCTGTA CGGGCGCTGG CCCGTAAATT CAATACCGTT
TGTGTACTCA AGGGCTCGGG CAGCCTGATT GCCGATGCCG ACGGGCGGCT GGCCCTGTGC
AATCATGGGC ACCCGGCGAT GGCCACTGCG GGGCTCGGCG ATGTGCTGGC CGGGTTGATC
GGCGCGCTGA TGGCGCAGCA CCTGACGCCA TTCGATGCTG CCTGTCTGGC CGTGTGGCTG
CACGCCAGCG CCGGTCAGAA AGTGGGTGAA TCCGGTCGCG GGCTGGCTGC CAGCGATATT
ATTCCCGCCA TTCGTCAGTT ATTGGAGGAG CTGCAACCGT GTCTGATTTA A
 
Protein sequence
MFDTKPHLPD ALYSAAQVRD LDARLIAAGT PGLELMQRAA HATWRAIRRR WPEANQLTVL 
AGRGNNAGDG YLVAALAHKA GWQVNVLAVS DPAGLTGDAA SAHAAASGID TQAWGGQPLA
GVVLDALLGT GLNGEVREPF LSAINAINAS GLPVAAVDIP SGLSADTGHK SGATVRADLT
VTFIGLKLGL LTGDAADLVG ELVFDDLQAD PALVAQTPAS AKRLDAHNLP YLAPRPRTAH
KGLFGRVLVI GGDHGFGGAA LLCAESALRS GAGMLTLATR AEHVPAALTR MPEIMSAAIR
SANQLMALIE PASVLVVGPG MGQGSWGRSL LSAAANADRP QVWDADALNM LAAGQVSLPK
NSVITPHPGE AARLLGVGIK DIQADRPAAV RALARKFNTV CVLKGSGSLI ADADGRLALC
NHGHPAMATA GLGDVLAGLI GALMAQHLTP FDAACLAVWL HASAGQKVGE SGRGLAASDI
IPAIRQLLEE LQPCLI