Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_4947 |
Symbol | |
ID | 1186632 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 5606929 |
End bp | 5608419 |
Gene Length | 1491 bp |
Protein Length | 496 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 637396268 |
Product | YjeF-related protein |
Protein accession | NP_794680 |
Protein GI | 28872061 |
COG category | [G] Carbohydrate transport and metabolism [S] Function unknown |
COG ID | [COG0062] Uncharacterized conserved protein [COG0063] Predicted sugar kinase |
TIGRFAM ID | [TIGR00196] yjeF C-terminal region, hydroxyethylthiazole kinase-related [TIGR00197] yjeF N-terminal region |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTCGACA CTAAACCTCA TTTACCCGAC GCGCTGTACA GTGCGGCGCA GGTCCGCGAC CTTGATGCCC GGCTGATTGC CGCCGGTACG CCAGGCCTGG AATTGATGCA GCGTGCAGCC CACGCCACGT GGCGCGCGAT ACGCAGGCGC TGGCCCGAGG CGAACCAACT GACGGTGCTG GCCGGACGTG GCAACAATGC CGGCGACGGT TATCTGGTGG CCGCGCTGGC GCACAAGGCG GGCTGGCAGG TCAACGTGCT GGCTGTCAGT GATCCGGCTG GGCTGACAGG CGATGCAGCG TCCGCGCACG CCGCGGCTTC GGGTATTGAC ACGCAAGCCT GGGGCGGGCA GCCGCTGGCC GGAGTGGTGC TGGATGCCCT GCTTGGCACT GGGCTCAACG GCGAGGTGCG CGAGCCCTTC CTTTCGGCCA TTAACGCGAT CAATGCCAGC GGGCTGCCGG TTGCAGCCGT GGACATTCCC TCGGGCCTGA GCGCCGACAC CGGGCATAAA TCGGGTGCGA CAGTACGCGC CGACCTGACC GTCACCTTCA TAGGCCTCAA GCTGGGGCTG CTGACCGGCG ATGCGGCAGA TCTGGTCGGC GAGCTGGTTT TTGACGATTT GCAGGCCGAT CCGGCACTGG TTGCGCAGAC GCCCGCCAGC GCCAAGCGTC TCGATGCGCA CAACCTTCCT TATCTGGCAC CGCGTCCGCG CACAGCCCAT AAAGGTCTGT TCGGGCGCGT GCTGGTTATC GGTGGCGATC ACGGCTTTGG CGGTGCGGCG TTGCTCTGCG CTGAAAGTGC CCTGCGCAGC GGTGCGGGCA TGCTCACGCT GGCGACCCGC GCCGAGCATG TTCCGGCAGC CCTGACACGC ATGCCGGAAA TCATGAGCGC GGCCATTCGC TCGGCAAACC AGTTGATGGC GTTGATCGAG CCGGCCAGCG TGCTGGTGGT CGGGCCTGGC ATGGGGCAGG GCAGTTGGGG GCGCAGCCTG TTGTCGGCTG CCGCCAACGC CGACCGGCCG CAGGTCTGGG ACGCCGATGC GCTGAATATG CTGGCGGCCG GGCAGGTGAG CCTGCCGAAA AACAGCGTCA TCACTCCGCA TCCGGGCGAA GCCGCGCGTT TGCTGGGTGT CGGTATCAAG GACATTCAGG CCGATCGCCC TGCCGCTGTA CGGGCGCTGG CCCGTAAATT CAATACCGTT TGTGTACTCA AGGGCTCGGG CAGCCTGATT GCCGATGCCG ACGGGCGGCT GGCCCTGTGC AATCATGGGC ACCCGGCGAT GGCCACTGCG GGGCTCGGCG ATGTGCTGGC CGGGTTGATC GGCGCGCTGA TGGCGCAGCA CCTGACGCCA TTCGATGCTG CCTGTCTGGC CGTGTGGCTG CACGCCAGCG CCGGTCAGAA AGTGGGTGAA TCCGGTCGCG GGCTGGCTGC CAGCGATATT ATTCCCGCCA TTCGTCAGTT ATTGGAGGAG CTGCAACCGT GTCTGATTTA A
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Protein sequence | MFDTKPHLPD ALYSAAQVRD LDARLIAAGT PGLELMQRAA HATWRAIRRR WPEANQLTVL AGRGNNAGDG YLVAALAHKA GWQVNVLAVS DPAGLTGDAA SAHAAASGID TQAWGGQPLA GVVLDALLGT GLNGEVREPF LSAINAINAS GLPVAAVDIP SGLSADTGHK SGATVRADLT VTFIGLKLGL LTGDAADLVG ELVFDDLQAD PALVAQTPAS AKRLDAHNLP YLAPRPRTAH KGLFGRVLVI GGDHGFGGAA LLCAESALRS GAGMLTLATR AEHVPAALTR MPEIMSAAIR SANQLMALIE PASVLVVGPG MGQGSWGRSL LSAAANADRP QVWDADALNM LAAGQVSLPK NSVITPHPGE AARLLGVGIK DIQADRPAAV RALARKFNTV CVLKGSGSLI ADADGRLALC NHGHPAMATA GLGDVLAGLI GALMAQHLTP FDAACLAVWL HASAGQKVGE SGRGLAASDI IPAIRQLLEE LQPCLI
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