| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4784 |
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| Symbol | |
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| ID | 1186467 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 5424383 |
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| End bp | 5425483 |
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| Gene Length | 1101 bp |
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| Protein Length | 366 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637396105 |
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| Product | GGDEF domain protein |
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| Protein accession | NP_794519 |
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| Protein GI | 28871900 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.1246 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGATAAAG ATCTTAAACT CCGACCCCGA ATTAAAAGGT TACTTTCACC CGCCGTCATG
CAGGCTGAGT TGCTTGGCGG CGCAGCCTGG TTATGGGTGT TGATGCTTGG CCCTTCCGTA
AAGATTAATC TATTCACCTG CTTTCTGACA CTGAGCCTTG CCTGTATTTG CTGGATACAA
CACACCACGA CCGTGTTTTG CATCTGGCGC TTGCTAGGCA TTGCCTACAT GCTTTTATTG
GCCACAGGAT TTTTCTACCT AATGGACGGC GATCCTGAGA TAAATATATT TGCCCTGCCG
CTGACCATAA CGCTGGCGAT CAGCAGCGCG TTGTTATTTG TTAAATTTTT AGACTACCTA
CTTTCGGCAG TTTTCGTCTG GCTCCTGACC TGGCTGTGTT GGCAAGAAGG CGTCTACGGA
GAAATAGGGA TTTACGTCTG GATTTTTTGT GTGGCCTCCG TGTGCATTGG CAGTGTGCTG
AATATCTCAT ACATCAAAAC CTTGCGAGCT GTGCTGTCAC TTGAAAGCAA GTTCAGAGAG
CTGGCAGAAA CCGACTACCT CACGTCTATT CCAAATCGTC GCGCCTTCAT GGAAAGCTTT
GACAGCTTGA TCAAGGGGGG AGAGTCTGGT TATCTAATCA TGCTGGACAT TGACAACTTC
AAGCTGATCA ATGACAGACA CGGTCACGAA ATAGGTGACA GAATATTGTG CTCCATGGCT
GCATGCCTTA GAGCAACCAG CGGCAGCCAT TGTGCCGGCA GAATTGGCGG GGAGGAGTTT
GGAGTTTTGA TCACGGGGGG CGATGAGCTG ACTGCGTGTG ACTACATATT AAGGCTGCTG
GAGACGGTAA GAGCAAATTT CGATCCGCCC TATAACTACA GCTGTAGTGT GGGAATGGTC
AGGTTTTCGG CGGCATCAAC AATGTCTGAA GCACTGAGCA TGGCGGACAA GAGCATGTAC
ATTGCTAAAA GAAACGGCAA GGACTGCGCT TACTTTGAAG GTCAGGAAAT TGTCTCTTTC
CTTTTCGACG ATTCAAAGCT TAAAGAAAAA TACCCGACTG AAACGCTCTC TGAGAATACT
TACCAAACTG ATACTCAGTG A
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| Protein sequence | MDKDLKLRPR IKRLLSPAVM QAELLGGAAW LWVLMLGPSV KINLFTCFLT LSLACICWIQ
HTTTVFCIWR LLGIAYMLLL ATGFFYLMDG DPEINIFALP LTITLAISSA LLFVKFLDYL
LSAVFVWLLT WLCWQEGVYG EIGIYVWIFC VASVCIGSVL NISYIKTLRA VLSLESKFRE
LAETDYLTSI PNRRAFMESF DSLIKGGESG YLIMLDIDNF KLINDRHGHE IGDRILCSMA
ACLRATSGSH CAGRIGGEEF GVLITGGDEL TACDYILRLL ETVRANFDPP YNYSCSVGMV
RFSAASTMSE ALSMADKSMY IAKRNGKDCA YFEGQEIVSF LFDDSKLKEK YPTETLSENT
YQTDTQ
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