| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4776 |
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| Symbol | hopI1 |
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| ID | 1186459 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 5416707 |
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| End bp | 5418173 |
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| Gene Length | 1467 bp |
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| Protein Length | 488 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637396097 |
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| Product | type III effector HopI1 |
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| Protein accession | NP_794511 |
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| Protein GI | 28871892 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0484] DnaJ-class molecular chaperone with C-terminal Zn finger domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCAACC TCACCCACAT TGCGTCTTCA TTGGCGCGGG CAGCGCTCAG CGATTCGACA
AAGCCGAAGA TGGAGCGCGC GATAAACGTC GCGAGCCACA TCGCTGGCAA AGTCGCGTTG
CAGGTCACCA GCTCATTACT GGAGCAGAAA GGTCTGCTTA ACGAGCGTCA GCAGAAAGGG
CTCTCGATGA TTCTGAAGGC CTTGAGCGGC AAGGAGCCGG TGAACAATGT CGAGACGCAC
GAAGGGGGAG GCCGATTCAA TCTGGCGCGA GCCGCCTTCG ACGTGGCCAG CGTTGTCTGG
GAGCGCGACA AGTCGATGCA TAACGTGATG AGCTTTCTGG GCGTCAGCGA CAGCAAGGGC
AAGATGTTGT TCTCTCTGGG CAAGAAGCTG GCGGATGCAA TGGCCAAGCC TGAGCCTGGC
AAGGACAACA GTGAGGCCAC AAATGCGCGC CATGCCTATT TCTCCAGCAA CTTGAAACTG
AACAAGTTGA TGAACGACCT CACTGACCAG GTTTTCAACA AGATTCGCCA GTCGAACGGT
GATCGCGTGC GACGACCCAT GCCAGAACCA TTCTGGAGAC CTTACGGCGC CCAACAGCAA
GCGCGCCCGC AAACGCCTCC CGGCACTCGC CCACAAGCCA ACAGCGCCCC GCCACCGCCG
CCGAAAGCAG AGCCACGACC TGCGTCGGGC CGGCCTGACG GCGCCCAACA GCAGGCGCGC
CCGGAAACGC CGCCTCGTAC TCGACCGCAG GCCAATAGCA CTCCGCCACC GCCGCCGAAA
GCAGAGCCAC GACCTGCGTC GGGCCGGCCT GACGGCGCCC AGCAGCAAGC ACGCCCGGAA
ACGCCGCCGC GCACTCGCCC GCAGGCGAAC AGCACGCCGC CACCGCCGCC CAAGGCAGAG
CCACGACCTG CGTCCGGCCG GCCTGACGGC GCCCAACAGC AAGCACGCCC GGAAACGCCA
CCTCGCACTC GCCCCCAAGC GAACAGCGCG CCGCCTCCGC CGCCCAAAGC AGAGCCACGA
CCTGCGTCCG GCCGGCCTGA CGGCACCCAA CAGCAAGCAC GCCCGGAAAC GCCACCTCGC
ACTCGCCCCC AAGCGAACAG CGCGCCGCCT CCGCCGCCCA AAGCAGAACC CAGCGCAGGC
GGCGAACGGC CTTCAACGGC GCGGCCCAAT AACACATCGG CTGCTGACGC ATCTGCCAGG
GTGGGCGATT CCGCACCTGC CAAGCCGCCC GTCAAGCCGT TGTACGAGCA CTTGGGCCTC
ACTGACATGT CGGTAGACTT ATCCGCCGTT AAAAAGGCTT ACAGAGATGC CGCGATGAAG
AACCACCCTG ATAAAAACCG CGGCAACGAG GCCGAGGCGG CCGAGCGCTT CAAAGTCATT
TCAAATGCGT ACAAGATTTT GTCCGACCCG GAGTTGCGCA AAGCATACGA CAACGGCCGT
ATCAATGAGG CTGGTAATAG GGCATGA
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| Protein sequence | MINLTHIASS LARAALSDST KPKMERAINV ASHIAGKVAL QVTSSLLEQK GLLNERQQKG
LSMILKALSG KEPVNNVETH EGGGRFNLAR AAFDVASVVW ERDKSMHNVM SFLGVSDSKG
KMLFSLGKKL ADAMAKPEPG KDNSEATNAR HAYFSSNLKL NKLMNDLTDQ VFNKIRQSNG
DRVRRPMPEP FWRPYGAQQQ ARPQTPPGTR PQANSAPPPP PKAEPRPASG RPDGAQQQAR
PETPPRTRPQ ANSTPPPPPK AEPRPASGRP DGAQQQARPE TPPRTRPQAN STPPPPPKAE
PRPASGRPDG AQQQARPETP PRTRPQANSA PPPPPKAEPR PASGRPDGTQ QQARPETPPR
TRPQANSAPP PPPKAEPSAG GERPSTARPN NTSAADASAR VGDSAPAKPP VKPLYEHLGL
TDMSVDLSAV KKAYRDAAMK NHPDKNRGNE AEAAERFKVI SNAYKILSDP ELRKAYDNGR
INEAGNRA
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