| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4592 |
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| Symbol | hopO1-3 |
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| ID | 1186275 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 5187067 |
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| End bp | 5187573 |
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| Gene Length | 507 bp |
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| Protein Length | 168 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 637395930 |
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| Product | type III effector HopO1-3 |
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| Protein accession | NP_794343 |
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| Protein GI | 28871724 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00199473 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAATATTA ACCCTTCCCT GGGCGCTCAT GGCAGCGCCT ACTCGTCGCC TCAAAGTGAT
ACTTCGAAGG CCACTGGAAA AGCACCTGCG CCTTCTTTTT TCAAACAGTT GGGCGGCTGT
TTTTCGCCGT GCCTTGGTTC CCATGCGTCA AGCAGCCAAC AACTGTCCGC CAGTCATGCG
CAGACGCTCA GTCAGAATTA CTCCAGCAAC ATTCAGGGGA CGAGCCGCAC ACGCCAGCCG
AGAGCACCCT CGCCACGCCT GTCAGATACG CCCATGAAGC AGGCGCTTTC CTCAATGATC
GAACGCGAGC GTTTGCGGCT TCAAGGTCTT TCGGGAGGAA TGTTCTCGGG CATTGACTCC
GCCGATGCCA TGATTGGTCG AGCGCTCACG AAGAAGGATT CAAACCCAAA GGCTGCGCGT
TTTAGTGATG ATGAGTTTCT CGCCGTTCAC CTCTACACAA CTTGCCTCTA CAGACCTATC
AATCATCATC TTCGGTATCA ACACTAG
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| Protein sequence | MNINPSLGAH GSAYSSPQSD TSKATGKAPA PSFFKQLGGC FSPCLGSHAS SSQQLSASHA
QTLSQNYSSN IQGTSRTRQP RAPSPRLSDT PMKQALSSMI ERERLRLQGL SGGMFSGIDS
ADAMIGRALT KKDSNPKAAR FSDDEFLAVH LYTTCLYRPI NHHLRYQH
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