| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4560 |
|---|
| Symbol | |
|---|
| ID | 1186243 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 5153159 |
|---|
| End bp | 5154538 |
|---|
| Gene Length | 1380 bp |
|---|
| Protein Length | 459 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 637395901 |
|---|
| Product | outer membrane porin, OprD family |
|---|
| Protein accession | NP_794313 |
|---|
| Protein GI | 28871694 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAAAACAA CCAGCACTGC GTTATTGGCA TTGTCTCTCT CATCGTTCGG CGCACTGGTT
CAGGCTGAAC CGGCAAGCCA GACGTTCATA CCGACCGAGC TGAGTTCCAA GAACGCACAG
GCCGACGCCA ACGGCTTTAT CGAAGATCAA CACCTGACCG GCACGACCCG TAACTGGTAC
GCCAATGAAC TCAAGCGTCG CGGCGAAGTG TTCCGCTACA ACGACAATGG CACTGCCGAG
CAGACCTCGC GTCGCATCAA CTGGCAGCAG GGCACCATCG TCAACTACAC CTCGGGTTAT
ACCCAGGGCG TTGTAGGTTT CTCCACCGAA CTGGCGCTGT ACAACGCCAT TGCGCTGGAC
CGTGACACCG ATGACTTTGC AGGCAGCTCC AACCGTACCC TGGCACACCG CGACGGCGAT
GCAGTCGGTC AGTGGAGCAA GATGGGTCTG GGCAACGTCA AGGCGCGGGT CTCCAACACG
GTTCTGACCA TGGGTCGCCA ATCGGTGAAC ACCCCGGTTA TCGCCTTCAT CGGCAACCGC
GCACTGCCCT CCAGCTTCCA GGGTGTTGCC GTACAGAGCG ACGAGCTGAA TAACCTGTCC
TTTCAAGCCG GTAGTTTCGA CCGTGTATCG CCACGTATGG AACAGAGCCT GGACAAGTTC
CGCTCCGAGT ACGGTGATCG CAGCCAGACC GCCGACCGTC TGGACATGTT CGGTGGTGAC
TACAAGCCGA CCGACAGCCT GACTGCCAGC TTCTATGCGT CGAACCTGGA AGATTTCTGG
CACCAGTACT ACTTCGGGTT CACCCACGAA CTGGGTGACA GCAAGGTCTT CGCGCTGAGC
ACCAATCTGA ACTACTACAA GACCAAGGAT GCGGGTCAGA GCAAACTGGG CGCAATCGAC
AACGATACCT ATAGCCTTTC CTTCACCGGT ACGCACAACG CGCACAGCGT CAGCCTTGCC
TATCAGGAAG TGAACGGTAA CGAATACTTC GACTACGCCC ACGACACCAA CGCGATTTTC
CTGGCCAACT CCCTGCTCTC GGACTTCAAC GGCCCGAACG AGAAATCCCT GCAGATCGCT
TACGTGCTGA ACATGGCCGA ATACGGCGTG CCGGGCCTTA AGTTCAACAT CTACCAGGCG
CGCGGCTGGG ACATCGACGG TACGCATTAC AAAGGCACCG GCTACACCGA CGTGCTGGCA
ATGGACGGCG AAACCCACTA CGAATACGGC ATCGGTTCGT CCTACTCGGT GCAGTCCGGC
CCGCTCAAGG CCACCGCTAT TCGCGCGACC TACACCACTC ACCGCGCCAG CGAGAATCAG
GCTGATGGCA ACATCAACGA ATTCCGTCTG GTGACCACTG TTCCATTCAA CATTCTTTAA
|
|---|
| Protein sequence | MKTTSTALLA LSLSSFGALV QAEPASQTFI PTELSSKNAQ ADANGFIEDQ HLTGTTRNWY
ANELKRRGEV FRYNDNGTAE QTSRRINWQQ GTIVNYTSGY TQGVVGFSTE LALYNAIALD
RDTDDFAGSS NRTLAHRDGD AVGQWSKMGL GNVKARVSNT VLTMGRQSVN TPVIAFIGNR
ALPSSFQGVA VQSDELNNLS FQAGSFDRVS PRMEQSLDKF RSEYGDRSQT ADRLDMFGGD
YKPTDSLTAS FYASNLEDFW HQYYFGFTHE LGDSKVFALS TNLNYYKTKD AGQSKLGAID
NDTYSLSFTG THNAHSVSLA YQEVNGNEYF DYAHDTNAIF LANSLLSDFN GPNEKSLQIA
YVLNMAEYGV PGLKFNIYQA RGWDIDGTHY KGTGYTDVLA MDGETHYEYG IGSSYSVQSG
PLKATAIRAT YTTHRASENQ ADGNINEFRL VTTVPFNIL
|
|---|
| |