| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4283 |
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| Symbol | pnlA |
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| ID | 1185964 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 4822443 |
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| End bp | 4823687 |
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| Gene Length | 1245 bp |
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| Protein Length | 414 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637395625 |
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| Product | pectin lyase |
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| Protein accession | NP_794039 |
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| Protein GI | 28871420 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3866] Pectate lyase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAAAAGCT GCTTCATGCA ATGCGCGGCT GCCATGTTGC TGACGCTTGC AGGGCCACAG
TACTTACCAG CGGCCGACCT GCCTGAAGGG TTTGCCAAAG GCGTCACCGG TGGCGGGTCG
GCCGCCGACG TGCATCCATC GACACTGGAC GACCTTCGAT CAGCTTTGTG TGCGTCACAT
GACGCGCACG GTGCGTGCAC AGACCAAACC CCAAGAGTCA TTGTGCTGGA CCACCTGTTC
GACTTTCGTG GCAGTGTCGT TGCCAACGGC AGCGCCGAAA CCACTGCGCC CGGCTGTGTC
GTCAAGCCCT GTGCGCAGGG TGGAGAACAG CTTGCACTCA ATGGCGCCAA TGACTTCTGC
CAATCCAGGC CAGCGGTCAT GGTGACCTAC GACAATGCCG GGTTGAAGCC ACTGAAAGTC
GGCTCGAACA AGACGCTGAT CGGTGCAGGC ACCAAGGCGG GCATTGCAGG CACAGGGCTG
TTCATCGGTG ACGGCGCGCA CAACGTGATT GTGCGTAACC TGACGCTTTC AGACATCAAC
CCCAGTGTCG TATGGGGTGG AGATGCGCTC ACCCTGAACA AGGCCGATGG CGTATGGATC
GACCACAACA CCTTTGCCCG CATCGGCAGG CAAATGATCG TGACTGGCTG GGGCACCGCT
TCACACGTCA CTATTTCCAG CAATGAATTC GATGGCCGAA CGCCTTACTC ATCGACCTGC
GATGGCCATC ATTACTGGGT CTGGCTGTTC CTGGGCAGCC AGGACACGCT GACGTTATCG
AGAAACTACC TGCACGACAC GTCCGGCAGA GCACCGCATT CCGGCGGAAT GAAAAATGCT
CAAATCCGCG CTCAACTGGT CAACAACGTG TTTCAGCGCA TGACCTACCA AGGCGCAATC
ATGTCGCGTA CCTCATCCTC GCAGTTGCTG GTAGAGGGGA ACGACTTCGA AAACGTAGCC
CATCCCCTGT TCAACGACAC GGACCAGCCG GGTACCGCAT TCGCCTTGTT CGAGCCGGTT
TCAGCGGCTG CGAACAGCAC GTGTATGAGC GTGATCGGCA GGCTTTGTAT CGCGAATCAG
CAACGAGCCA GTGGCGAAGA CTATCGCCCG CAGGACGCCT CCGCTTTGCA GGCGTTCCGG
GATTATCGGC AATACCTGGT GGTGCCGGTG TCGGCACAAG AGGCACGGGC GCGGGTGCCA
GGGGAGGCGG GGGCGGGGAA GGTGGGTGTT GGTTTACGGC CTTGA
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| Protein sequence | MKSCFMQCAA AMLLTLAGPQ YLPAADLPEG FAKGVTGGGS AADVHPSTLD DLRSALCASH
DAHGACTDQT PRVIVLDHLF DFRGSVVANG SAETTAPGCV VKPCAQGGEQ LALNGANDFC
QSRPAVMVTY DNAGLKPLKV GSNKTLIGAG TKAGIAGTGL FIGDGAHNVI VRNLTLSDIN
PSVVWGGDAL TLNKADGVWI DHNTFARIGR QMIVTGWGTA SHVTISSNEF DGRTPYSSTC
DGHHYWVWLF LGSQDTLTLS RNYLHDTSGR APHSGGMKNA QIRAQLVNNV FQRMTYQGAI
MSRTSSSQLL VEGNDFENVA HPLFNDTDQP GTAFALFEPV SAAANSTCMS VIGRLCIANQ
QRASGEDYRP QDASALQAFR DYRQYLVVPV SAQEARARVP GEAGAGKVGV GLRP
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