| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4229 |
|---|
| Symbol | |
|---|
| ID | 1185909 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 4762199 |
|---|
| End bp | 4763020 |
|---|
| Gene Length | 822 bp |
|---|
| Protein Length | 273 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637395575 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | NP_793990 |
|---|
| Protein GI | 28871371 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG1639] Predicted signal transduction protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAAGA TGGCTGACGA GGTGCAGAGA AACTTGATCA AGGCCATCGA CAGAGATGCC
TTGTTTCTCC CTACCCTGCC GGAAGTAGCA CTGAGAATTC GCCTTGCCGC CGAGGACACT
GAAATCAGTA TCCTGGACCT GAGCAAGGTC ATCGGTAGCG ATACGGCCCT ATCCGCGCGC
CTGATAAAGG TCGCGAACAG CCCGCTGCTA CGCCCCAATT TCGAGGTCAG CGACGTAAAT
ACGGCGATCC GTCGCCTGGG CGTCAACTAC ACCTGCAACC TGGCCATCGG CCTGGTGGTA
GAGCAGATGT TCCACGCCAA GTCGCCCGTC ATCGAGCAGA AAATGCGCGA CATCTGGAAA
CAGAGCCTGC AGGTCGCCGG TATCAGTTAC ACCCTGTGCC AGAATTACAC GAACCTCAAA
CCTGACCAGG CGACGCTCGC GGGGCTGATC CATTTGATCG GCATTCTGCC GATTCTTACC
TACGCAGAAG ACCACTACGA ACTGCTTGCC GACCCGATCA GCCTTAATCA TGTGATCGAC
AGCATTCACC CGGTCATCGG CGAACGCCTG CTGCGCTCAT GGGATTTCCC GGAGCCGCTG
GCCTGTGTGC CGGGTCAGTT CCAGAATTTC GCACGCGTTT CCAGAAACCC GGACTACATT
GATCTGGTTC AGATAGCCAC CGTGCATGTC CACAAGGACA CCGACCATCC ATTCAGCCTT
ATTGAAATGG TCGACCTGCC GGCGTACAGC CAGTTGCGGC TTTCTCGCGC CGACGGCATG
CTCGCAGCCC AGATGGACGA AGCCAAAAGC ATGCTTTATT AG
|
|---|
| Protein sequence | MSKMADEVQR NLIKAIDRDA LFLPTLPEVA LRIRLAAEDT EISILDLSKV IGSDTALSAR
LIKVANSPLL RPNFEVSDVN TAIRRLGVNY TCNLAIGLVV EQMFHAKSPV IEQKMRDIWK
QSLQVAGISY TLCQNYTNLK PDQATLAGLI HLIGILPILT YAEDHYELLA DPISLNHVID
SIHPVIGERL LRSWDFPEPL ACVPGQFQNF ARVSRNPDYI DLVQIATVHV HKDTDHPFSL
IEMVDLPAYS QLRLSRADGM LAAQMDEAKS MLY
|
|---|
| |