Gene PSPTO_4113 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_4113 
Symbol 
ID1185793 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand+ 
Start bp4636922 
End bp4637602 
Gene Length681 bp 
Protein Length226 aa 
Translation table11 
GC content61% 
IMG OID637395459 
Productlipoprotein, putative 
Protein accessionNP_793874 
Protein GI28871255 
COG category[S] Function unknown 
COG ID[COG3650] Predicted membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.0777387 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTCACTG CCCGTTCCGT CCTCGTATTT GCCCTTCTAC CGCTGTTTGC CGGGTGTCAG 
TTGCTCGGTA AACAGGCCGA GGAACCGAAG GTTTCTACGG CTGGCATGCT CCGTATGCAG 
GGCGATCTGA CTGGCAGCAA CGGCCAATTG CTGTTCAAGC CATGCAACGA GCAGCGTCGT 
TATGTGGTCA AGGATCGCGG CAATACCGGC ATTTTGCAGG AAGCCGCTTC GCTGGCCGAC 
AAAAACGGCA AGGTGTTTGC CGACCTGCGC GGCAGTTTTA CTGCGAGCAA GGCGGCCAAC 
AGCGATGGCC AGGTGGACCT GCATCAGCTG TATCGCGTCG AGCGTCCCGG TCAGGCCTGT 
GAAGACCTCA ATTTCAAACG CCTGACGCTG CACGTCAACG GCAACAAACC TGCCTGGAAC 
GTCAACGTCA GTGGCAAAGG CATGGTGCTG GAGCGCGAAG GGCTCGCCCC CCTGGCCTTG 
CCGTACGTGG AAGAGAAGCT TCCCGATGGC AGTTTCAGCG TCAGCAGCGA AGCCAACAAC 
CAGCGCATCG AGATCTGGGT AGCCCCGCAG CGCTGCGTTG ACAGCGTCGA CGGCTCGGTG 
CAGCACCTCA CCGCAGAGCT GCGTATCAAC GGCCAGGCCC AGCGCGGCTG CGGTTATTAC 
GGCGGTTCGC GCGACGACTG A
 
Protein sequence
MFTARSVLVF ALLPLFAGCQ LLGKQAEEPK VSTAGMLRMQ GDLTGSNGQL LFKPCNEQRR 
YVVKDRGNTG ILQEAASLAD KNGKVFADLR GSFTASKAAN SDGQVDLHQL YRVERPGQAC 
EDLNFKRLTL HVNGNKPAWN VNVSGKGMVL EREGLAPLAL PYVEEKLPDG SFSVSSEANN 
QRIEIWVAPQ RCVDSVDGSV QHLTAELRIN GQAQRGCGYY GGSRDD