| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4093 |
|---|
| Symbol | |
|---|
| ID | 1185773 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 4605553 |
|---|
| End bp | 4610457 |
|---|
| Gene Length | 4905 bp |
|---|
| Protein Length | 1634 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 637395439 |
|---|
| Product | leucine rich repeat domain protein |
|---|
| Protein accession | NP_793854 |
|---|
| Protein GI | 28871235 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4886] Leucine-rich repeat (LRR) protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTAACTG CTCACGACAA CACGCCTGAA ACACAGGCAT CGCCTGACGT GCCCGTTTCC
TTGATAACCC CGCGCAAGCT CGACTCTGAG CCGTTTGAAG CCGAACATCC GAACGCCGGA
TTCATCAGGG CCAATTTACC TGGCTGGTAC TCGAGCGCAC CGGCGGCATT GCGCCAGGCA
CTGCATGCCA GCCAGCAGAA AGCCCGGCGT TCGGCCCAAG CGCTGGAACC CATCCGCAAC
CGCCTGTTAT CGGCAAAGAC GTTCGCCGCG CCTGTGCTGT CGAAAGCGTT TTTTGAACGT
TTCAAATTTG CTCTGGACGT TGAAGACTTC CAACTGATGA CCTGGCGCTA CGACAGCACC
TGGAAACCGG CTCCCCTTGA GCAGACGCTT TTGCAGGCAG CGTTACAGAA CTTTGCCGCC
AGCAACCGCA GCCGCTTCGA TCCGCACTCG GCCATTCTGC GTACAGGTGG CTTGCGTTAC
TGGCTGATCG ACAGCACCCA GCACAGGTAC ACGGTGGAAT ACCATGACCG CCAGGACATC
AGCCTTGAGC AGTTCGCTGA TTTTTGCCAT GAGCTGGACC TGGGCAGCCA GTACCAGTCC
CATCTGGACA GTGTATTCAA GCCTTCCACT CCCGATGCTG AGCAGGCGGT AGCCGTCGCG
TTCATCGACA GTGAGCGTGA TGCCGTCGAG GTACTCGCGC ACATTGCCAG GATGAAGGGC
GATGTCACCG ATGCGGCTTA CCAGATGTTG CTGAGCATGG TGAAGTCCGT CGACCGCCCG
GAATGGGATG GCAAGGGCGT GCGCTGTTGC CAGTTACACA TGCTCGATAC CTACGTTTTT
TCGGGCTGCC TTTTGCACGG CGCTCTGCTG ATCCAGCAGG ACATTCCTGA TCCTGATGGC
GGGCCTTGCA TTGTCTATAT GCCTTCCGAG CCTTCACATC CGATCAAACA GTTCGCATCA
CTCCAGGCCT TAAACGCCAG TCTTGTGGAA GCGCTCGACA GCGACAGTTA TCGTCGATAT
TTCAGCCGCT TTGTCAGTCT GACCCGCAGT CCGCAATTCT TTGCCACGCT GAAGTCACGC
CTACACCCGG CCCAGAACGC CACGCTGGAC GTCAACGCTG ACCTTGTATT GCAGGCACAG
CCATTTTCAA AACTACCGTT TCAGTTGCTG TATGACCACC TGCTGGCCAA AACCTACGGC
GACTCACGGG CAATCGCGGT GCCTTCCGCG CAGGTGGATC AGCAGGCTCG CGATGCACTG
CTTGAAAGCC TGGAAAGCAC TGGCATGAAT CTGCTCAATG TGGCCGGATT CTTTGTGCCG
GTGCTGGGCG AAGTCATGGC TATGGTCGCC CTCTATCAGC TTGCCAGTGA AGCGTTCGTT
GCCTACGAAG ACTGGACGCA CGGGGAAGTG GAAGAGGCCA TGCAACATGT TTATGACATT
GGCGAAAACG TCGCCCAGAT GCTGCTCCTG GGCACCGTCA TCGGCGCGGT GAACGGGCTC
AAGCCGTCGA TGTTCATCGA AAGCCTGGTG CAGAAGAGCG TCGATGGATC GATCCGCCTT
GGCAAACCGA CCGTTGATGC TTTTGCCGAT ACGGTCAGGT TGCCTGATGG GCTGAGTCTC
AATGCGCTCG GGCTTTACGA ATTTGATGGC AAGACCTGGC TGCCTCTGGA TGGCAAGCTC
TATCGCGTAG CGGCGGATGC CCATCACGCA AACTATCGAA TCAAGCATCC GGTGGACGAG
CGCTCGTATT CGCCGAGGCT GGAACACAAT GGCGCTGGCG CCTGGCGTCA TGAGTGGGAA
AACCCCATGG GCTGGGATGA GGTCACGGCG TTCAGGCGTC TGAACGCGAC GTGTGAAGCG
TTCAGCGAAG CGGAAATCCG CAAAACGCTG GGTATTAACG GCGTCAATGA GGCGTTGCTG
CGCCAGATAC ATGTCGAGAA CCTCCCGCCT CCGGCCTTGC TGAAAGATGC CGTACAGCGC
GTTGAAATCG AGCGGGAGCT GCAAAGCTGT ATTGATGCAC TCAAGGCCGA AGATCTGTCG
CCGGTGTCGG TTTCTCACCT CGAGCCATGG ATGAAGCTGC TGGTGTCGTC GCCGCTTTGG
CACAAGACCC GGGGGCTGTT ATTGATCGAT GCTGAAGGGG GCCTGCTGGA TTCCTGGAAC
GCGGGGGCGC ACATGACACT TTCATCTCAT GTGGTAGGCC CGACACGGCA CCTGACTCAG
GTTCTGGGCC AATTACTGGA CGGCCTGACG CCTGACGAAA TCACTCGTCT GACGGGCAGC
GGCAGCACAG ACAAGGTCGT TCAGCTTCGT GGCTTGAAAA GTCATTTGGC CGATTATGCT
CAATACCATA TAGAGCAGCT GCTCGATGGG GTTCATGCGC TGAAAGCCCG CAGCAGCGAC
CCGCTGGTCC AGTTGATACA GCGCGATTTC AGCCGCTTGC CGGATAGCGT CGCGCTTGAA
CTCCTCGACA TGACGAGCGA GGCTGACAAG GTCCGCATGA CATCGGAAAA GCGTATCCCT
CTGGAGCTTG CCGAGCACGC CCGTGAGTAT CAACAGCAGC TGAGGATAAA CAGGGCCCTT
GAGGGCTTCT ACAGAAGTTC GACCGACAAT CCCGACACTC AGGCCGCAGG ACTTGGCCTG
TTGCAATACG TGCCGGGCTG GGGCGGTGAC AGATCAATCG ATCTGCTCAA AGACACACTG
GAGGGAGACG AGATAGGCAG TCTTGCCAGC GAGAAGGCTA CCGCCTTGCA CCGGATTCTC
GTCAGAACTG AAGAGGGATT TGAGCCCTTC AATCATTTGG GAGAGTCTCT TGGTGCACGG
AATCCGAGGT TTTTCGGCAG CCTGTTGAGC GTTCTTCCTG ATGACGTGCG CCTCACTATC
AATCTGCCGT TGAATGCGCA AGAGCAGCAG TTGCGCAGTC TGTTGGGCGG TATTGCATCT
GAACGACGCG ACCGCGTCAT GAGTATCCTG CAGATGCAAC CGATCAAGCC TGGCATCAAA
TGGCCGCACA GATTGCCTGA CGGCCGTATC GGCTATCCTC TGAGCGGTCG CTTGCGTGGG
TTCTTTCGCC GACTGGGTAT CGGTTCGTCC AATCACTCGC CAGAGCTTGC AGTGAAAAGT
TTATACCCGG ATTTTTCCGC TGATCAGGTG GCGAGTTTTC TTGATGAGTT GCGGGCCGAA
CATACCGGGT CGGCCGGGCA GTTGCCCCAT TTTGTCAAGC AAAGGCTGCG TGGTCTCAGG
GATGAATTAC GCAACCTTCA AACCACCCTG GATGAGTGGA TAACGGAAAC GCCATTCTCT
TTGCTGCGCA CATCCAGGGA AGTCGCGGCG AGGCGCATTC ACGGCTGCTG GAGAAGACTC
GGTAATCACT CCATAAGTCT TCAGGGTGAG TTTCTGGGCT ATTCGCTTGA TCTGGATAAT
CTGCGAGTAG GGGTAATACC GGAGATAACC GCCAGCTTCG GCCATGTGGC TGAGTTGAAG
GCGTGGAACA TGCAGCTTCC CCATTCACAC ATGGATGCAT TGCTGAAAAA CTTCACTAAC
CTGCGGTCGT TGAATCTGGG TTTCAATGAA CTGCAGGCCC TGCCAGAGTC GATAGGGAGA
ATGACTCGGC TTACAGAGCT GTCACTCAGA AATAACCCCT TGGGCTGGAC AGAGGCCTCC
AATGCCATTT TGCAGAACCT GCGCCGACTG GAGGTTCTGA ATCTCAACTA TTGTCCGCTT
GGGCCGCAGG TGCGTCTTGC GGATCTCAAT TCGTTACGTA TGCTGTTTTT GCGTGCTACA
GGTATTGAAA CGTTGCCAGC GTGGAATTGG CGCAGGTCGG ATTTGATTCG TCTTGATGTG
CGCGATAATC GTATTTCGGA ATTATCGCTC GAGGAGCTTG ATGGCATTGA GCGCTCCCTC
GGCTCCACTC GCCTTCACCT GCTTTTGAGC GGCAATCCAT TGACTGCGCA AGCAATGGCC
AGCATCCGAC TGTTTCTCGA GGGCAGGACC CGGCCGCGAT TGGGTGTCGG CCAGAACCGT
CCTGCGCTTG AGGCCGGGCC TGACAGTACA CCCTGGCTTG CAGGTCTGGA TCGTGAGCAA
GTGGAAGCCC GTGACCGGCT TTGGCAGGAT CTGCGAGCCT GTACAGGTTC TACGGACTTT
TTCCAGATGT TGAGCGACCT GACGCACTCG GCTGATTTTT CAAATAACCA TGAAACACTC
GTCAGGCGAG TCTGGGCGAT GATAGACGCT GCCTCTGCAA GTACGGAGTT GCGTCTCCAG
CTATTCGATG TTGCCGCTCA CCCGCAGACT TGCGGCGATG GGCTGGCGTT GGTCTTTGGC
GACATGGAAG TGCGCGTGCG GGTGTTCTCG ATCATGTCAT CCACGCCGCA AGCCGCGCAG
CCACTGGAGC TGTTCAAGAT GACGCGCAGT CTGGACCGTC TGGATCAGGT GGAAAAAATT
GCACTGCGCG AGATTGCTCT TCGTCAGCAT CAAGGCGACA GGGTCGATGA GGCCGAAGTG
CGGTTGGCCT ACCGTGTCGG CCTGCAAGCC CGGCTTGATC TGCCCGGTCA GGCCCAGACC
ATGCTGTTCA GCAATATCGC GAAGGTCACC GACGCTGATT TGCAGGACGC GCACAGCGAA
ATAATCACAC GCGAAAGTAC CCAGGCATTT TTCGAGTCGC TGATCGCCAG GGAATTCTGG
ATGAGTTATC TGGAAGCTCG TTACGCCTCC GATTTCGACG TGGTAAAGAG GCCTTTCAGT
GAGCGTCTGA GCGTTCTGGA TGAATTGCCT GCGAACCAGC AATCCGACCA GCAGTATCTT
GATCGGATCG CCTTGATTTC CAGTGAGCGT GAGCAGGCAC TCAATGAGTT TGCGATCAGG
CTTTCCATGC AGATTGCTGA CGCGGTGAAC ATGGCGCCTC AATAA
|
|---|
| Protein sequence | MLTAHDNTPE TQASPDVPVS LITPRKLDSE PFEAEHPNAG FIRANLPGWY SSAPAALRQA
LHASQQKARR SAQALEPIRN RLLSAKTFAA PVLSKAFFER FKFALDVEDF QLMTWRYDST
WKPAPLEQTL LQAALQNFAA SNRSRFDPHS AILRTGGLRY WLIDSTQHRY TVEYHDRQDI
SLEQFADFCH ELDLGSQYQS HLDSVFKPST PDAEQAVAVA FIDSERDAVE VLAHIARMKG
DVTDAAYQML LSMVKSVDRP EWDGKGVRCC QLHMLDTYVF SGCLLHGALL IQQDIPDPDG
GPCIVYMPSE PSHPIKQFAS LQALNASLVE ALDSDSYRRY FSRFVSLTRS PQFFATLKSR
LHPAQNATLD VNADLVLQAQ PFSKLPFQLL YDHLLAKTYG DSRAIAVPSA QVDQQARDAL
LESLESTGMN LLNVAGFFVP VLGEVMAMVA LYQLASEAFV AYEDWTHGEV EEAMQHVYDI
GENVAQMLLL GTVIGAVNGL KPSMFIESLV QKSVDGSIRL GKPTVDAFAD TVRLPDGLSL
NALGLYEFDG KTWLPLDGKL YRVAADAHHA NYRIKHPVDE RSYSPRLEHN GAGAWRHEWE
NPMGWDEVTA FRRLNATCEA FSEAEIRKTL GINGVNEALL RQIHVENLPP PALLKDAVQR
VEIERELQSC IDALKAEDLS PVSVSHLEPW MKLLVSSPLW HKTRGLLLID AEGGLLDSWN
AGAHMTLSSH VVGPTRHLTQ VLGQLLDGLT PDEITRLTGS GSTDKVVQLR GLKSHLADYA
QYHIEQLLDG VHALKARSSD PLVQLIQRDF SRLPDSVALE LLDMTSEADK VRMTSEKRIP
LELAEHAREY QQQLRINRAL EGFYRSSTDN PDTQAAGLGL LQYVPGWGGD RSIDLLKDTL
EGDEIGSLAS EKATALHRIL VRTEEGFEPF NHLGESLGAR NPRFFGSLLS VLPDDVRLTI
NLPLNAQEQQ LRSLLGGIAS ERRDRVMSIL QMQPIKPGIK WPHRLPDGRI GYPLSGRLRG
FFRRLGIGSS NHSPELAVKS LYPDFSADQV ASFLDELRAE HTGSAGQLPH FVKQRLRGLR
DELRNLQTTL DEWITETPFS LLRTSREVAA RRIHGCWRRL GNHSISLQGE FLGYSLDLDN
LRVGVIPEIT ASFGHVAELK AWNMQLPHSH MDALLKNFTN LRSLNLGFNE LQALPESIGR
MTRLTELSLR NNPLGWTEAS NAILQNLRRL EVLNLNYCPL GPQVRLADLN SLRMLFLRAT
GIETLPAWNW RRSDLIRLDV RDNRISELSL EELDGIERSL GSTRLHLLLS GNPLTAQAMA
SIRLFLEGRT RPRLGVGQNR PALEAGPDST PWLAGLDREQ VEARDRLWQD LRACTGSTDF
FQMLSDLTHS ADFSNNHETL VRRVWAMIDA ASASTELRLQ LFDVAAHPQT CGDGLALVFG
DMEVRVRVFS IMSSTPQAAQ PLELFKMTRS LDRLDQVEKI ALREIALRQH QGDRVDEAEV
RLAYRVGLQA RLDLPGQAQT MLFSNIAKVT DADLQDAHSE IITRESTQAF FESLIAREFW
MSYLEARYAS DFDVVKRPFS ERLSVLDELP ANQQSDQQYL DRIALISSER EQALNEFAIR
LSMQIADAVN MAPQ
|
|---|
| |