| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4046 |
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| Symbol | |
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| ID | 1185726 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 4552631 |
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| End bp | 4556299 |
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| Gene Length | 3669 bp |
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| Protein Length | 1222 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637395393 |
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| Product | tail tape measure protein |
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| Protein accession | NP_793808 |
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| Protein GI | 28871189 |
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| COG category | [S] Function unknown |
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| COG ID | [COG5281] Phage-related minor tail protein |
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| TIGRFAM ID | [TIGR01541] phage tail tape measure protein, lambda family
[TIGR02675] tape measure domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.374256 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCCTCA CTTCACGACT TGCCATTGAG GTCGATAGCC GCAGTGCTGA GCAGAAAGTG
CAGGACCTTC GTCGCTCGCT TGAGGCTCTG AATAATGCTG GCGTCCGGAC AGGCCCCGTC
ATGTCGGGGG CAGGTGGAGC TATCAACGAC ACCGGTCGAA GCTCACGCTC AGCCGCCACT
CAGGTACAAG GCCTGGATAG GACTGTTCGT TCGTTAGCAT CTGCTGCGGC TGGGCTTGCA
GGGCCTTTGC TGGCAGCTTT CGCCACAAAG TCGCTGTATG ACGCCAGTGA GGCCTATAGC
ACGCTGACAA ACCGCATGAA GCTGGTCACA AGCAACGCCA CTGAGCTTGC CGCGGCGCAA
AAGGCTGTTT TCTCGATCGC CCAGAGCGCA TACCAGCCAC TGACGGCAAC CGCCGAGCTC
TATCAACGCA TCGCGACGAA CCAAAAGGAA TTGAAGCTAA CGGGCGAGGG TGTAGCTGGT
GTCGTTGGAA CGATCAGTAA GACCTTGGCC ATCTCTGGCG CGTCAGCTGC ATCTGCCAAC
GCAGCCCTGA TCCAGCTGGG CCAGGCATTC GCGTCCGGAG TGCTGCGAGG CGAAGAGCTG
AACAGCGTAA TGGAGCAGGC CCCGGCGCTG GCTCAAGCTA TCGCAGCCGG TATGGGCAAG
ACAGTCGGCG AGCTTCGGTC GCTCGGCGCG GCAGGCCTCC TAACTGCTGA TGCGGTTGTA
AAGGCTTTGC AGGCGCAGCG TGGGGCTGTG GACGCTCTGT TTGCGAGGAC ATCGGCCACC
ATCGGTAACA GCCTCACAGC GCTGGGCAAC TCGACTACCT CGTTCATAGG TCAGCTTGAT
CAGGCAACAG GATCTAGCGC GTCACTTGCG AAGAGCATCC TGTCACTTTC TAGCGCGATC
GACGGCGGGC TGCCGGCCGC AATCAAATTG GCCACTGACA ATTCCGAGGA GTTGGGCCAG
GTGCTCACCA CCGGTCTCTA TGTTGCTCTT GCGCGGGTTG CTGGTGGATT TGCTCAACAG
GCTGCGCAGG CTGGTTACGC AGCGGTGGCC AACCAAAAGG CGCTGACCGT TTCAGCAGCC
ACGGCTACGC AGGATCTCGC TGCCGCTAAG TCGAAACAGG TAGACGCCAA AGCTGCAGTA
GACCGCGCCA ACGCGCAGGT AGCCTCAGCG CAACGGCAAG TTGCTGCCGA CAAGGAAGTG
ATGGCTTCTG AGCTGAACAG GACCAGGGCT GTTCAGGCGG CGATGGTTGC CGAGAGGGAG
ATAGAGGTTC AGCGTCTAAA AGCGCAAATT TCAGATCAGG GCCGGGCTGC ATCTCTTAAT
AGGCTGGCAG AGCTGAGCCG CGCACATGTT GTGGTAACAA ACCAAGTTGC TGCCGCCGAG
AAAGCGCTTG CAGCAACCAC AGTTTCTGCG TCGGCGACCA TCACCGCAGC ATACGGCACA
AGGACAGCGG CGGTTGCGGC TTACGGGGAA GCGACTGCAG TCGTCAATGC GTTAACGGTC
GCATCCAATA ACGCAGCGGC GGCGGCAAGC TTGACGTCCA GAGCACTTGG AGCGTTAACC
GCAGCAGGCA CCGGCCTCCT GGGAATGCTC GGCGGTCCGC TCGGGCTGCT CTTCATTGCA
GGCGCTGTCG CTGTGTCCTT CATGGATTTC CGCAGCAGCA GCGACAAGGT GAATGAGGGG
CTGCAGAATC TGAAGGGGCC GCTCGACGAT GTTATTGCCA GATTCAAGCA GCTCACCAAA
GATCAGCAAG CAGCAGCGCT GGTCAAGTGG GGAGAAACCC AGGCCGAGGC GGCAAAGGCA
GCAAACGAAG AGTTTCAAAA TCTCAACAAA AGCCTGCAGG CCGGCCTGGT CGGACCAAGA
TCAAGTGCTG CAGGCACAAA GATATTCAGC GACTACTCGG CACAGATCGC CTCAGCAAGA
GAAGCGGGCG AGAGCCTGAC GCCGATTTTC GAGAAGCTGC GCAGTGAGCC CGGAGTTCCG
GAAAGCCTGA TAAATAGCCT TGTCAAATCG GCGGGCGCTT ATTCTGGCTT ATCGGCTTCA
GCAAAAGAGG CGAAGGACAG AATCGCAGCG CTAAAAACGG AATCGGCAAA CGCCGCCACC
ACCGCTGCGC TCTCCACTGG CGCAACCAAC GTAATGACCG GCGCAGGGAA GAAATACAAC
GAAGAGCTTC AAAAGCAGCT CGGCAAGCTC CAGGACAACA ACGATGCGGT AAAGGAGGCC
AACCGCTATA TCGCGGAGCA CAAAGACCTT ACCGAGGCTG ACAAGGTCGC CATTCTGTCC
ACGGCAAATG CGCTGAAATC TCAGGAGGCG GCAAACAAGG CTGCAGCCAA AGCGACCCGA
GAGGCCGGCA AGGCGTACAC AGAAAGCGCT GGCACGAAGG CTCTTGACGA TGCTCGGAAG
CAGTACGCCG TTCTCGGCGA GCAGTCGGCG ATCATCAAAG CCCAAAGGGG CGACACTGAA
AAGCTTGGAG CAGCCGCAAC CGAGCTCATC AAGTGGGAGC AGCAGCTCGC CAACATCAAG
AGCAAGCAAA CCCTGACCGC CGACCAGAAG TCATTGGTGG CGAATCAGGA CTTGGTCACG
GCTCAATTGC GCCGCAACGC TGCCCTGGAA AAAGAGAACC AGCTCAGCAT CACCCGACTG
GAAAACGAGT CGAAGCTCAA AGCTTTTCGG GAAAACCTCG ACTCACAGCT TGGTCTTGCA
AAAGATGGAC TGGACAGCGA CCTGGCTGGT GCCGGTCTCG GGGATCAGGC CCGGCAGCGC
CTCCAAGACG ACCTCAAGAT ACGCCAGTCG TATCAAAAGG ACCTGGACAA GCTCAGTCGC
GACTACAACA AGATCACGAA CCCAACCTCA GCTGATACGT CGCTTTACCA GAACGAGACG
AACGCGCTCA ACGCCGCGTT GCAGACCCGC CTGGCGATGC AGCGCCAGTA CTACACGGAT
GTAGATCGGG CCCAGTCGGA CTGGGCTTTG GGTGCTAATT CGGCGCTTGA GAACTACCTC
GAGCAGTCGC GCGACGTGGC CGGGCAGACC AAGCAGCTGT TCACCAACGC TTTCAGCAGC
ATGGAAGACG CGGTGGTGAA CTTCGTGAAA ACCGGGAAAC TGTCCTTCAA GGACTTTGCC
AACGGCGTGA TTGAGGATCT GATCCGCATT CAGGTGCGGC AGGCGGCGGC GGGGTTCCTC
AGCACAGCAT TCAGCTTCCT GAGTGGCGGT AGTGCGGCGC TTGGCCAAGG CACCATGACG
GGCTCAAGCC AGACCATTTC CAAAACCGGA TTCTCGGGTG GCGGATTTAC TGGCATCGGT
GGCAAGTACG AAGAAAAAGG CGTGGTGCAT GGCGGCGAGT TTGTCGTGAA AAAAGAAGTA
GTCAGCCAGC CCGGCGCGCG TGAGTTCCTG GAGCGCATGA ATGCCAATAC CAAGGGTTAC
GCCGACGGAG GTTATGTAGG CAGCGCCGCA TCAACATCCA GGGTTTCTAG CTCTTCAGCA
TCGGTAAGCT TGCCAACGAT CGAGCAGAAC TTTTACTTTC AAGGAAGCGC TGACGAGAAC
ACGGCTCAGC AACTGAAGCA GGCTGCTGAC GACGGTGCAT CCCGAGGCAT GAGGGGTGGC
TACGAGATGA TGTTGCGCGA TCTGCAGAGA AACGGACCGG CAATGCAAAT TATTAGGGGT
AAACGATGA
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| Protein sequence | MALTSRLAIE VDSRSAEQKV QDLRRSLEAL NNAGVRTGPV MSGAGGAIND TGRSSRSAAT
QVQGLDRTVR SLASAAAGLA GPLLAAFATK SLYDASEAYS TLTNRMKLVT SNATELAAAQ
KAVFSIAQSA YQPLTATAEL YQRIATNQKE LKLTGEGVAG VVGTISKTLA ISGASAASAN
AALIQLGQAF ASGVLRGEEL NSVMEQAPAL AQAIAAGMGK TVGELRSLGA AGLLTADAVV
KALQAQRGAV DALFARTSAT IGNSLTALGN STTSFIGQLD QATGSSASLA KSILSLSSAI
DGGLPAAIKL ATDNSEELGQ VLTTGLYVAL ARVAGGFAQQ AAQAGYAAVA NQKALTVSAA
TATQDLAAAK SKQVDAKAAV DRANAQVASA QRQVAADKEV MASELNRTRA VQAAMVAERE
IEVQRLKAQI SDQGRAASLN RLAELSRAHV VVTNQVAAAE KALAATTVSA SATITAAYGT
RTAAVAAYGE ATAVVNALTV ASNNAAAAAS LTSRALGALT AAGTGLLGML GGPLGLLFIA
GAVAVSFMDF RSSSDKVNEG LQNLKGPLDD VIARFKQLTK DQQAAALVKW GETQAEAAKA
ANEEFQNLNK SLQAGLVGPR SSAAGTKIFS DYSAQIASAR EAGESLTPIF EKLRSEPGVP
ESLINSLVKS AGAYSGLSAS AKEAKDRIAA LKTESANAAT TAALSTGATN VMTGAGKKYN
EELQKQLGKL QDNNDAVKEA NRYIAEHKDL TEADKVAILS TANALKSQEA ANKAAAKATR
EAGKAYTESA GTKALDDARK QYAVLGEQSA IIKAQRGDTE KLGAAATELI KWEQQLANIK
SKQTLTADQK SLVANQDLVT AQLRRNAALE KENQLSITRL ENESKLKAFR ENLDSQLGLA
KDGLDSDLAG AGLGDQARQR LQDDLKIRQS YQKDLDKLSR DYNKITNPTS ADTSLYQNET
NALNAALQTR LAMQRQYYTD VDRAQSDWAL GANSALENYL EQSRDVAGQT KQLFTNAFSS
MEDAVVNFVK TGKLSFKDFA NGVIEDLIRI QVRQAAAGFL STAFSFLSGG SAALGQGTMT
GSSQTISKTG FSGGGFTGIG GKYEEKGVVH GGEFVVKKEV VSQPGAREFL ERMNANTKGY
ADGGYVGSAA STSRVSSSSA SVSLPTIEQN FYFQGSADEN TAQQLKQAAD DGASRGMRGG
YEMMLRDLQR NGPAMQIIRG KR
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