| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3974 |
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| Symbol | tolR-2 |
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| ID | 1185650 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 4481829 |
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| End bp | 4482293 |
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| Gene Length | 465 bp |
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| Protein Length | 154 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 637395321 |
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| Product | tolR protein |
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| Protein accession | NP_793738 |
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| Protein GI | 28871119 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0848] Biopolymer transport protein |
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| TIGRFAM ID | [TIGR02801] TolR protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0054859 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGCTTTAA TCGCTCGAGA TCGTCGCAGA AAACGCAAGC CGGTCGCTGA AATGAACGTA
GTGCCCTACA TCGACGTGAT GCTGGTGCTG CTCGTGATTT TCATGGTGAC GGCTCCCATG
ATCAACCAGG GCGTGAAAGT CGATTTGCCC AAGGTCTCCA GCGAGGCTTT GCCGCAAGAC
AACAACAATC AGGTCCTGAC CATTTCGATC AAGGCTGACA AGACCTATTA CTGGAACCTT
GGCAGCGAAG TCGATACCGA CAAGCAGATG GACAAGGCAA TGACCCTGCC GCAACTGACC
GCTGCAGTGA CCAAGATCGT CGCTGCCGGT CGTGACGCAG GCAAGCAGAC GCAGGTTTTC
ATTCGTGGTG ACAAGACCGT CGATTACGGC TCGGTCATGG GCACGATGGG CGGGCTGCAG
AAGGCTGGGG TCGGGAATGT TGGTTTGATT ACCGAGGCAC CCTGA
|
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| Protein sequence | MALIARDRRR KRKPVAEMNV VPYIDVMLVL LVIFMVTAPM INQGVKVDLP KVSSEALPQD
NNNQVLTISI KADKTYYWNL GSEVDTDKQM DKAMTLPQLT AAVTKIVAAG RDAGKQTQVF
IRGDKTVDYG SVMGTMGGLQ KAGVGNVGLI TEAP
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