| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3886 |
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| Symbol | |
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| ID | 1185557 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 4398715 |
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| End bp | 4400487 |
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| Gene Length | 1773 bp |
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| Protein Length | 590 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637395236 |
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| Product | EAL domain/GGDEF domain protein |
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| Protein accession | NP_793657 |
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| Protein GI | 28871038 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain
[COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00288669 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCATCA CTGAACAGCT GAGCGCACTG AGTTCCATTC TGGCTCGTAG TGATTTGCAC
AGCCTGTTCC AGCCCATCGT CTCGCTGTCG GAGCGCCGGA TTCTGGGTTA TGAAGCCCTG
ACGCGCGGCC CGTCCAACAG CCCGCTGCAC TCACCCCTCA ACCTGTTCGC GATTGCCCGT
CAGGCGGGCC GTCTGAGTGA GCTTGAATTG AGTTGCCGTG AAAGCGCCTG CCGTCGTTTC
AGTCAGCAGA AATTGCCGGG CAAGCTGTTT CTCAACGTCT CTCCCGAATC ACTGCTGGAA
ACCTCCCATC CGCCGGGTCG CACGCTGGAA ATGCTGCGCC GTTACCAGAT CGCGCCCAAG
GATGTGGTGA TTGAGTTGAC CGAGCAGATG CCCACCGATG ATTTCGACCT GCTGTACAAC
GCACTGCACC ACTACCGTGA CATGGGCTTT TCAATTGCTC TGGACGATTT GGGCGCGGGT
TATTCCAGCT TGCGGCTGTG GTCGGAACTG CGCCCGGACT ACGTGAAGAT CGATCGGCAC
TTTATCGACG GCATTCACCA GGATGCGGTG AAACGCGAGT TCGTCGGCTC CATGCTGCAA
ATGGCCAAGG CTTCCCGCGC GACCGTGATC GCCGAGGGCA TCGAGTTGCC GGAAGAACTG
GCAGCCCTGA AAGACATGGG CGTGGACCTG GTTCAGGGCT ATCTGCTGGC GCGCCCGCAG
GAGCGTCCGC CACGCGACAC CCGAACCATG CTGCCCAAGG CAGAAACCGC CAGCGCCCCG
TTGAACGAAG AAGCAGCCGA CCTTTCTGCC CTGCTCAACC CGCAGCCTTC GGTGAGCCAG
TCCACGCCCA CTGCACAAGT GCTTGAGGCG TTCCGCAGGC AGGCCAACCT CAATTCACTG
GCGGTGCTGG ATGATGAAGC CAGGCCCTGC GGGATTGTCC ATCGGCACTC GCTGTCCGAA
GCCCTGCTCA AGCCATTCGG CACCGAGCTG TTTGCCCGTA AACCGATCAG CCGCCTGATG
AGCGATGACT TTCTGGCGGT CGAAGTCAGC CAGTCATTGC AGCAGGTCAG CCGCTTGCTG
ACCAGCCGTG CCCGGCAGCG CATCGAAGAG GATTTCATCA TTACCGCCAA CGGCGCTTAT
CTGGGGCTCG GCCGGGTGAT CGATGTGCTC AAGCTGATTA CCGAGATGAA GATCCAGCAG
GCGCGCTATG CCAACCCGCT CACCCTGCTG CCTGGCAACG TGCCGATTCA GCAATGCCTG
ACCCGCCTGC TGCAACAGGG CCGTGAGTCG ATGATCTGTT ACGTGGACAT CGACAGCTTC
AAGCCCTTCA ACGACATCTA CGGTTACGCC CGTGGAGACG AAGTGCTGCT GTGCCTGGCG
CAGTGCCTGA ATGATCGCGT TGATCCGAGC CGGGACTTTG TCGGGCATAT CGGCGGGGAT
GACTTTCTGA TGGTGTTAGG CTTCGAGGAC TGGGAACGGC GTCTCAAAAA CCTGCTGGAT
GACTTCCAGA ACCAGTGCCG CCGGTTCTAC CGCGCAGAAC ACCTGGAAGC CGGCTGCTTC
ATCGCCCTTA ACCGTCAGGG GCAACGTCAG GACTTCCCGC TGCTGTCGCT GTCGATTGGC
GTGGTGCACC TGCACGAAGA GAGCTGCGCC TATATCGACG CCAGCCAGTT GGCCGACCTG
GCCTCACAAG CCAAACACTT CGCCAAAGAC GTGGCTGGCG CGAGCATTCA TGTCATCGAC
TCGACACGAA TGGATCTACT GATGCAGGCG TGA
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| Protein sequence | MTITEQLSAL SSILARSDLH SLFQPIVSLS ERRILGYEAL TRGPSNSPLH SPLNLFAIAR
QAGRLSELEL SCRESACRRF SQQKLPGKLF LNVSPESLLE TSHPPGRTLE MLRRYQIAPK
DVVIELTEQM PTDDFDLLYN ALHHYRDMGF SIALDDLGAG YSSLRLWSEL RPDYVKIDRH
FIDGIHQDAV KREFVGSMLQ MAKASRATVI AEGIELPEEL AALKDMGVDL VQGYLLARPQ
ERPPRDTRTM LPKAETASAP LNEEAADLSA LLNPQPSVSQ STPTAQVLEA FRRQANLNSL
AVLDDEARPC GIVHRHSLSE ALLKPFGTEL FARKPISRLM SDDFLAVEVS QSLQQVSRLL
TSRARQRIEE DFIITANGAY LGLGRVIDVL KLITEMKIQQ ARYANPLTLL PGNVPIQQCL
TRLLQQGRES MICYVDIDSF KPFNDIYGYA RGDEVLLCLA QCLNDRVDPS RDFVGHIGGD
DFLMVLGFED WERRLKNLLD DFQNQCRRFY RAEHLEAGCF IALNRQGQRQ DFPLLSLSIG
VVHLHEESCA YIDASQLADL ASQAKHFAKD VAGASIHVID STRMDLLMQA
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