| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3870 |
|---|
| Symbol | |
|---|
| ID | 1185541 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 4382255 |
|---|
| End bp | 4383436 |
|---|
| Gene Length | 1182 bp |
|---|
| Protein Length | 393 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637395221 |
|---|
| Product | patatin family protein |
|---|
| Protein accession | NP_793642 |
|---|
| Protein GI | 28871023 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1752] Predicted esterase of the alpha-beta hydrolase superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.838023 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCAGATC CCGCAGTAGT GACCCGTGCT GTAAGTGATG TCGAGCCTGT GACCGGGCTC
ATTTTGTCAG GTGGCGGTGC TCGTGCCGCT TATCAGGTGG GCGTACTTGC AGGCATTGCC
GACCTGTTGC CGCCCGGGTC GCCGAACCCC TTTCCAGTCA TCGTCGGCAC CTCTGCCGGG
GCCATCAACG CCGTCAAGCT GGCCAGTGGC GCCCTGCATT TTCGGATTGC CATTCACCAG
TTGACCGAGT TCTGGCAGTC ATTTCGCAGC CATCAGGTTT TACGCAGCGA CTGGGGCGGG
GTCATTCATC AGGCCAGCCG GTTTTTTGGC CGCAGCCTGA TGGGCTTCGG GCGCAATATT
CCGGTTGCCC TGCTCAATAG CTCGCCGTTG CGGGACCTGC TCAACGAGCG GCTGGACCTT
TCCGGTATCG AAGCCGCCAT TGACGCTCAT CATTTGCGCG CCGTGGCGGT GACCGCATTT
GGTTACGAAT CAGGCCAGGC GGTCACGTTC TATCAAGGCC GCGGCACCAT CGAACCCTGG
CTGCGCCATC GGCGCATTGG TCGACCGACA CAACTGACCG TGGATCACCT GCTCGCCAGC
TCAGCCATTC CGTTGCTGTT CGCCCCGGTG ATGCTGGACG ATGAATACTT TGGTGACGGT
GCGGTACGTC AGTCGGCGCC GATCAGCCCG GCGCTGCACC TGGGGGCCAA TCGTGTTCTG
GTCGTGGGCG TCAGTGGCAA CCCGCGCGGG CTTAAAACCG AACGACCGGC ACCGCGCCTG
CCCGTTGGTG TGCAGCCAAC GCTGGCACAG ATCAGTGGCC ATATGCTCAA CAGCACGTTC
ATTGACAATC TGGAAAGCGA TATCGAGTTG CTGGAACGCC TGAACATGGC CAGTTCGTTG
CTGCCCGATG ATCAGATCAG GCAACCGGGC ATGGAGCCGG TCGAAGTGCT GGTCATTTCA
CCGAGCCGCC CACTGGACGA AATCGCCGCC CGGCACCGCC GCGAATTGCC CCCCGCACTC
CGAACCTTCA TGCGCGGTCC GGGCGCGACC AAGAGCAGTG GTGCCAGTGT GCTGAGCTAT
TTGTTGTTCG AGTCGGGCTA CTGCAGCGAG CTGATTGAAC TGGGCCGTCA CGACGCCGTT
GCCCAGGGTG CAGAATTGAA ACGCTTCCTG CGCCTGAAAT AA
|
|---|
| Protein sequence | MPDPAVVTRA VSDVEPVTGL ILSGGGARAA YQVGVLAGIA DLLPPGSPNP FPVIVGTSAG
AINAVKLASG ALHFRIAIHQ LTEFWQSFRS HQVLRSDWGG VIHQASRFFG RSLMGFGRNI
PVALLNSSPL RDLLNERLDL SGIEAAIDAH HLRAVAVTAF GYESGQAVTF YQGRGTIEPW
LRHRRIGRPT QLTVDHLLAS SAIPLLFAPV MLDDEYFGDG AVRQSAPISP ALHLGANRVL
VVGVSGNPRG LKTERPAPRL PVGVQPTLAQ ISGHMLNSTF IDNLESDIEL LERLNMASSL
LPDDQIRQPG MEPVEVLVIS PSRPLDEIAA RHRRELPPAL RTFMRGPGAT KSSGASVLSY
LLFESGYCSE LIELGRHDAV AQGAELKRFL RLK
|
|---|
| |