Gene PSPTO_3823 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_3823 
Symbol 
ID1185494 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand- 
Start bp4332060 
End bp4332722 
Gene Length663 bp 
Protein Length220 aa 
Translation table11 
GC content59% 
IMG OID637395175 
Producthypothetical protein 
Protein accessionNP_793596 
Protein GI28870977 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1280] Putative threonine efflux protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.121747 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGGAGTTTT CCAACGGTTT TCTGTTGAGT CTGTCGTTAT GCCTGGACAT AGGTCTGGCC 
AATATCGCCA TGATCACGCT GTCGATGCAG CGCGGTTTTG CCAAGGGCTT ATGGCTGGGG 
CTGGGGACCT GCGTCGGCGA TCTGGCGTAT GCGATTCTGG CCATGCTCGG CATGGCGGTG 
CTGCTCCAGT ATGAAGCCGT GCGCTATGTG CTCTGGCTCG GCGGAACTGC GGTGCTGGCC 
TGGTTTTGTT TCAAGATGGT CATGAGCTCT ACGACGGTCA GTGCCGGTCT CGATAATCAG 
GAGGTCCAGT CGGACAAGTC CAGCCTGTCG CTTTTCCTGC GCGGGATCTT TCTGGCAATG 
TCGTCACCCA GCGCCATCCT CTGGTTCGCT GCCGTCGGCG GTGCGCTCAT CGCTCGGCAA 
GGCTCTGATC TGCTCAGCGC CTCGACCTTT CTTGCCGGGT TCGTTGTGGC GGGTGTCGTC 
TGGTCGATCT CGCTGTGCGC ACTGGCTCAT CAAGGCGGGC GTTTTATGGG CGAAAAGATG 
TTGCGCTGGT CCTACATTGC CTCGGCGCTG ATCTTTGCCT ATTTCACCCT CTACGTCGTG 
ATCAGCGGAT ACCTGGAATT TGTCGCCGTC TCACCTGCGT TGCCTGCGTT GCCTGCGTCG 
TAG
 
Protein sequence
MEFSNGFLLS LSLCLDIGLA NIAMITLSMQ RGFAKGLWLG LGTCVGDLAY AILAMLGMAV 
LLQYEAVRYV LWLGGTAVLA WFCFKMVMSS TTVSAGLDNQ EVQSDKSSLS LFLRGIFLAM 
SSPSAILWFA AVGGALIARQ GSDLLSASTF LAGFVVAGVV WSISLCALAH QGGRFMGEKM 
LRWSYIASAL IFAYFTLYVV ISGYLEFVAV SPALPALPAS